Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP31466
DateThu Jan 5 11:47:54 GMT 2012
Unique Job ID1838cd9a37bec695

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3qe7A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:uracil permease;
PDBTitle: crystal structure of uracil transporter--uraa
Confidence and coverage
Confidence:100.0% Coverage: 85%
378 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSHQHTTQTSGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDT
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   .........70.........80.........90.........100.........110.........120
Sequence  SAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWG
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   .........130.........140.........150.........160.........170.........180
Sequence  AIGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETLVSIGNL
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   .........190.........200.........210.........220.........230.........240
Sequence  TSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLGWMLGDVHYNGIVSAPPSVMTVV
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   .........250.........260.........270.........280.........290.........300
Sequence  GHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMKQALYVDSI
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   .........310.........320.........330.........340.........350.........360
Sequence  SSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLVIFLSPLAGMVPGYAAAG
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   .........370.........380.........390.........400.........410.........420
Sequence  ALIYVGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGR
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   .........430.........440.....
Sequence  LRDLSPCVIIVALLFILKIVFIDAH
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3qe7 chain A

3D model

Region: 17 - 417
Aligned: 378
Modelled: 395
Confidence: 100.0%
Identity: 15%
PDB header:transport protein
Chain: A: PDB Molecule:uracil permease;
PDBTitle: crystal structure of uracil transporter--uraa

Phyre2

PDB 3lpz chain A

3D model

Region: 299 - 312
Aligned: 14
Modelled: 14
Confidence: 12.7%
Identity: 21%
PDB header:protein transport
Chain: A: PDB Molecule:get4 (yor164c homolog);
PDBTitle: crystal structure of c. therm. get4

Phyre2

PDB 3org chain B

3D model

Region: 135 - 403
Aligned: 254
Modelled: 254
Confidence: 12.6%
Identity: 10%
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter

Phyre2

PDB 2ht2 chain B

3D model

Region: 13 - 231
Aligned: 206
Modelled: 219
Confidence: 9.5%
Identity: 12%
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex

Phyre2

PDB 1hlv chain A domain 2

3D model

Region: 6 - 18
Aligned: 13
Modelled: 13
Confidence: 8.2%
Identity: 31%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Centromere-binding

Phyre2

PDB 1iuf chain A domain 2

3D model

Region: 2 - 18
Aligned: 17
Modelled: 17
Confidence: 8.1%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Centromere-binding

Phyre2

PDB 1w3g chain A

3D model

Region: 14 - 30
Aligned: 17
Modelled: 17
Confidence: 7.2%
Identity: 18%
PDB header:toxin/lectin
Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus;
PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.

Phyre2

PDB 3iys chain A

3D model

Region: 15 - 30
Aligned: 16
Modelled: 16
Confidence: 7.0%
Identity: 25%
PDB header:virus
Chain: A: PDB Molecule:major capsid protein vp1;
PDBTitle: homology model of avian polyomavirus asymmetric unit

Phyre2
1

c3qe7A_
2

c3lpzA_
3

c3orgB_
4

c2ht2B_
5

d1hlva2
6

d1iufa2
7

c1w3gA_
8

c3iysA_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qe7A_



100.0 15 PDB header:transport protein
Chain: A: PDB Molecule:uracil permease;
PDBTitle: crystal structure of uracil transporter--uraa
2c3lpzA_



12.7 21 PDB header:protein transport
Chain: A: PDB Molecule:get4 (yor164c homolog);
PDBTitle: crystal structure of c. therm. get4
3c3orgB_



12.6 10 PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter
4c2ht2B_



9.5 12 PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
5d1hlva2



8.2 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
6d1iufa2



8.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
7c1w3gA_



7.2 18 PDB header:toxin/lectin
Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus;
PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.
8c3iysA_



7.0 25 PDB header:virus
Chain: A: PDB Molecule:major capsid protein vp1;
PDBTitle: homology model of avian polyomavirus asymmetric unit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0