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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3iysA_

Fold library idPDB HeaderMoleculeTitle
c3iysA_PDB header: virusChain: A: PDB Molecule: major capsid protein vp1;PDBTitle: homology model of avian polyomavirus asymmetric unit


Added to library: Sat Jan 29 08:33:59 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSCPRPQQVPRLLVKGGIEVLDVKSGPDSITTIEAYLQPRPGQKNGYSTVITVQAEGYQDAPHSTEVPCY
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SSGGGGGS


TT


B


SSBTTTB






SSSS




GGG

B
 .........80.........90.........100.........110.........120.........130.........140
Sequence SCARIPLPTINDDITCPTLLMWEAVSVKTEVVGVSSILNMHSGAFRAFNGYGGGFTICGPRIHFFSVGGE
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SSSB



GGGGGS

BS
SSSSSS
S





S
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PLDLQACMQNSKTVYPAPLIGPGEGERRETAQVLDTGYKARLDKDGLYPIECWCPDPAKNENTRYYGNLT
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Known secondary structure (DSSP)




S
TT


SSSTTSSSTT


TTTTTT
TT



STTTSBTTT



SS
S

 .........220.........230.........240.........250.........260.........270.........280
Sequence GGPETPPVLAFTNTTTTILLDENGVGPLCKGDGLFLSAADVAGTYVDQRGRQYWRGLPRYFSIQLRKRNV
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TT







SS




TTS


B
SSS
GGG


 .........290.........300.........310.........320.........330.......
Sequence RNPYPVSGLLNSLFNDLMPRMTGQSMQGSDAQVEEVRVYEGMEGLAPEIDMPPKAPR
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Known secondary structure (DSSP)
SGGG
TTTSTT
SS






S
SSSSS
S













S
SS







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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