Job Description P37019 Confidence 100.00% Date Thu Jan 5 11:54:30 GMT 2012 Rank 4 Aligned Residues 423 % Identity 40% Template c3nd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Resolution 3.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	I	L	F	M	A	A	V	V	G	T	L	V	G	L	A	A	V	A	F	D	K	G	V	A	W	L	Q	N	Q	R	M	G	A	L	V	H	T	A	D	N	Y	P	L	L	L	T	V	A	F	L	C	S	A	V	L	A	M	F	G	Y	F	L	V	R	K	Y	A	P	E	A	G	G	S	G	I	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	P	R	T	L	V	A	A	I	V	V	G	L	I	T	G	V	L	G	A	G	F	K	S	A	V	N	N	M	L	Q	W	R	S	Q	L	A	Q	I	L	A	P	I	P	P	L	A	W	L	V	T	A	L	I	S	G	G	M	V	A	L	S	F	W	L	M	K	R	F	A	P	D	T	S	G	S	G	I	P	Q
Template Known Secondary structure																																									S	T	T	S		T																						T	T	T		G	G	G	S	B		S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	G	A	L	E	D	Q	R	P	V	R	W	W	R	V	L	P	V	K	F	F	G	G	L	G	T	L	G	G	G	M	V	L	G	R	E	G	P	T	V	Q	I	G	G	N	I	G	R	M	V	L	D	I	F	R	L	K	G	D	E	A	R	H	T	L	L	A	T	G	A	A	A	G	L	A	A	A	F	N
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		I	E	G	H	L	E	G	K	L	P	L	V	W	Q	R	V	L	P	I	K	L	V	G	G	F	L	S	L	G	A	G	M	L	A	G	F	E	G	P	T	I	Q	M	G	G	S	I	G	Q	M	T	G	G	W	F	K	.	A	T	Q	E	N	Q	R	I	L	I	A	V	G	A	G	A	G	L	A	T	A	F	N
Template Known Secondary structure						T	T	S	S	S																					T	T		S			T																			T	T	.																							T
Template Predicted Secondary structure																																																										.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	L	A	G	I	L	F	I	I	E	E	M	R	P	Q	F	R	Y	T	L	I	S	I	K	A	V	F	I	G	V	I	M	S	T	I	M	Y	R	I	F	N	H	E	V	A	L	I	D	V	G	K	L	S	D	A	P	L	N	T	L	W	L	Y	L	I	L	G	I	I	F	G	I	F	G	P	I	F	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	L	A	G	V	A	L	I	G	E	E	M	H	P	R	F	R	S	Q	T	L	A	Y	H	S	L	L	F	G	C	V	M	A	T	I	I	L	R	M	I	R	G	Q	S	A	I	I	S	L	T	E	F	K	R	V	P	L	D	S	L	W	M	F	I	I	L	G	I	L	F	G	V	M	G	Y	T	F	N	R
Template Known Secondary structure												S	S	S					S	S			T	T																			T		S	S		S	S			T	T						G	G	G
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	L	G	M	Q	D	L	L	H	R	V	H	G	G	N	I	T	K	W	V	L	M	G	G	A	I	G	G	L	C	G	L	L	G	F	V	A	P	A	T	S	G	G	G	F	N	L	I	P	I	A	T	A	G	N	F	S	M	G	M	L	V	F	I	F	V	A	R	V	I	T	T	L	L	C	F	S	S	G
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence		G	L	F	K	V	L	D	W	F	D	R	L	P	P	L	.	.	.	A	T	K	W	K	G	F	L	L	G	S	I	I	G	I	L	S	L	F	P	L	P	L	T	D	G	G	D	N	A	V	L	W	A	F	N	S	Q	S	H	F	S	T	L	I	L	V	F	C	G	R	F	L	L	T	L	I	C	Y	G	S	G
Template Known Secondary structure												T					.	.	.																	T	T	S	S	S	S		S	S	S	S								T	T	S																								T	T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	G	G	I	F	A	P	M	L	A	L	G	T	V	L	G	T	A	F	G	M	V	A	V	E	L	F	P	Q	Y	H	L	E	A	G	T	F	A	I	A	G	M	G	A	L	L	A	A	S	I	R	A	P	L	T	G	I	I	L	V	L	E	M	T	D	N	Y	Q	L	I	L	P	M	I	I	T	G	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	G	G	I	F	A	P	M	L	G	I	A	S	I	V	S	V	A	M	A	R	H	F	H	L	L	F	P	S	Q	I	P	E	P	A	V	M	A	I	A	G	M	G	A	L	V	A	A	T	V	R	A	P	L	T	A	I	L	L	T	I	E	M	T	D	N	Y	F	V	I	L	P	L	L	V	T	C	L	V
Template Known Secondary structure			B			S																								T	T	T		S	S	T							T	T	S								S												T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	L	A	Q	F	T	G	G	K	P	L	Y	S	A	I	L	A	R	T	L	A	K	Q	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	V	V	A	E	A	L	G	G	K	P	I	Y	T	V	L	L	E	R	T	L	A	K	Q	N	R
Template Known Secondary structure							T	T	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450