Job Description P0AFH0 Confidence 17.18% Date Thu Jan 5 11:26:13 GMT 2012 Rank 31 Aligned Residues 43 % Identity 14% Template c2o8xA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc Resolution 3.00 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	P	F	Q	R	E	V	W	K	T	L	R	T	I	P	.	.	.	.	.	.	.	.	.	.	C	G	Q	V	M	H	Y	G	Q	L	A	E	Q	L	G	R	P	G	A	A	R	A	V	G	A	A	N	G	S
Query Conservation																		.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																											.	.
Template Sequence		G	F	E	D	L	V	E	V	T	T	M	I	A	D	L	T	T	D	Q	R	E	A	L	L	L	T	Q	L	L	G	L	S	Y	A	D	A	A	A	V	C	G	.	.	C	P	V	G	T	I	R	S	R	V	A	R
Template Known Secondary structure											T	T	T	T	S	S													T	S												T	.	.	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions