Job Description P0AGD3 Confidence 100.00% Date Thu Jan 5 11:28:49 GMT 2012 Rank 5 Aligned Residues 193 % Identity 45% Template c1gv3B_ PDB info PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase Resolution 2.0 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																															.													.	.	.	.	.	.	.
Query SS confidence																																															.													.	.	.	.	.	.	.
Query Sequence		M	S	F	E	L	P	A	L	P	Y	A	K	D	A	L	A	P	H	I	S	A	E	T	I	E	Y	H	Y	G	K	H	H	Q	T	Y	V	T	N	L	N	N	L	I	K	G	.	T	A	F	E	G	K	S	L	E	E	I	I	.	.	.	.	.	.	.	R	S	S	E	G	G	V	F	N	N	A	A	Q	V	W
Query Conservation																																															.													.	.	.	.	.	.	.
Alig confidence																																															.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	A	E	L	P	P	L	P	Y	G	Y	D	A	L	E	K	A	I	D	A	E	T	M	K	L	H	H	D	K	H	H	A	A	Y	V	N	N	L	N	N	A	L	K	K	H	P	E	L	Q	N	S	S	V	E	A	L	L	R	D	L	N	S	V	P	E	D	I	R	T	T	V	R	N	N	G	G	G	H	L
Template Known Secondary structure		T	T							S	S		T	T	T	T	T	T	T	S											T															T		G	G	G	T	T	S								T	G	G	G	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	T	F	Y	W	N	C	L	A	P	N	A	G	G	E	P	T	G	K	V	A	E	A	I	A	A	S	F	G	S	F	A	D	F	K	A	Q	F	T	D	A	A	I	K	N	F	G	S	G	W	T	W	L	V	K	N	S	D	G	K	L	A	I	V	S	T	S	N	A	G	T	P	L	T	T	D	A	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	H	T	I	F	W	Q	I	M	S	P	D	G	G	G	Q	P	T	G	D	I	A	Q	E	I	N	Q	T	F	G	S	F	E	E	F	K	K	Q	F	N	Q	A	G	G	D	R	F	G	S	G	W	V	W	L	V	R	N	P	Q	G	Q	L	Q	V	V	S	T	P	N	Q	D	N	P	I	M	E	G	S	Y	P
Template Known Secondary structure									T	B		T	T			S	S														S	S																	S	S									T	T	S									T	T			G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	V	D	V	W	E	H	A	Y	Y	I	D	Y	R	N	A	R	P	G	Y	L	E	H	F	W	A	L	V	N	W	E	F	V	A	K	N	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	M	G	N	D	V	W	E	H	A	Y	Y	L	R	Y	Q	N	R	R	P	E	Y	L	N	N	W	W	N	V	V	N	W	S	E	I	N	R	R	T	Q	A
Template Known Secondary structure								S	G	G	G	T					T	T										G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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