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Job DescriptionB8YM76
Confidence100.00%DateThu Jan 5 10:55:43 GMT 2012
Rank5Aligned Residues368
% Identity33%Templatec3e2dB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80...... ...90.........100.........110.......
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Query Sequence  KPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYT. . . HYALNKKTGKPDYVTDSAASATAWSTGVKTY
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Template Sequence  AEIKNVILMIGDGMGPQQVGLLETYANQAPNS. IYKGNKTAIYQLAQEGVIGSSLTHPEDAIVVDSACSATMLATGIYSS
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TT
.TTTT


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   1........10.........20.........30.. .......40.........50.........60.........70.........
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  NGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALEAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL
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Template Sequence  SEVIGIDSQGNHVETVLEKAKKAGKATGLVSDTRLTHATPASFAAHQPHRSLENQ. . . . . . . . . . . . . . . . . . . IASDML
Template Known Secondary structure  TT
BSB
TTS
B


TT
TTSTTT

BS
TT
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   80.........90.........100.........110.........120.........130.... .....140
 
   198.200.........210......... 220.........230.........240.........250......
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Query Sequence  NARADVTLGGGAKTFAETATAG. . . . . . . . . . . . . . . . . . . . . EWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPL
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Template Sequence  ATGADVMLSGGLRHWIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEKDGYQLAFNRNMLDDA. . . . KGDKL
Template Known Secondary structure  T
S
GGGSS
GGGGGTSTTT
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SS


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   141........150.........160.........170.........180.........190.........200.........210. .....
 
   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  LGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANP
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Template Sequence  LGLFAYSGMDDGIAYSNKKK. . . . . . . . . . . . . . . SGERTQPSLKEMTQKALNILSKDEDGFFLMVEGGQIDWAGHSNDA
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TT
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   217..220.........230...... ...240.........250.........260.........270.........280.
 
   337..340.........350.........360.........370.........380.........390.........400.
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Query Sequence  CGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVM. . . . . . . . . . . . . . .
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Template Sequence  GTMLHELLKFDEAIQTVYEWAKDREDTIVIVTADHETGSFGFSYSSNDLPKPQKRSGEAFADRDYAPNFNFGAFDILDGL
Template Known Secondary structure  TT
SSS



BSSS



B

SSGGGSSS
B

SSB


T
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   282.......290.........300.........310.........320.........330.........340.........350.........360.
 
  
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Template Sequence  YNQKQSYYGMISEFQKLDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEEVPAINDFDAFFPY
Template Known Secondary structure  T

S
TS
GGG


SS




TT

TT
TTT

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SSSGGG

S
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   362.......370.........380.........390.........400.........410.........420.........430.........440.
 
   402.......410.........420......... 430.........440.......
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Query Sequence  . . . . . . . . . . . . SYGNSEEDSQEHTGSQLRIAAYGPHAAN. . VVGLTDQTDLFYTMKAAL
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Template Sequence  NDRGNLLAREQATGQNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMHHSELGEYIKQQV
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TT


SS


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GGGSST
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   442.......450.........460.........470.........480.........490.........500.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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