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Job DescriptionB8YM76
Confidence98.28%DateThu Jan 5 10:55:43 GMT 2012
Rank33Aligned Residues286
% Identity20%Templatec2gsoB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100.........110.........120..
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Query Sequence  AKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALG
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Template Sequence  PHALLLISIDGLRADML. . . . . . . . . . . . . . . DRGITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHH. . .
Template Known Secondary structure 

TT

GGGG...............SSSS
SS


SS
S


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   45....50.........60. ........70.........80.........90.........100......
 
   123......130.........140.........150.........160.........170.........180.........190.........200..
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Query Sequence  VDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALEAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARAD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . GIVHNSMRDPTLGGFWLSKSEAVGDAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ......................S

SSSTTT
TT
T
GG...............................
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   107..110.........120.........130...
 
   203......210.........220.........230.........240.........250.........260.........270.........280..
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Query Sequence  VTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDK
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Template Sequence  . . . . . . . . . . . . . . . . . WWGGEPVWVGVENTGQHA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ATWSWPGSEAA
Template Known Secondary structure  .................G

S

TT
..................................SS
TTTTS
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   134.....140.........150. ........160..
 
   283......290.........300.........310.. .......320.........330... ......340.........350........
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Query Sequence  PAVTCTPNPQRNDSVPTLAQMTDKAIELLS. . KNEKGFFLQVEGASIDKQDHA. . ANPCGQIGETVDLDEAVQRALEFAK
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Template Sequence  IKGVRPSQWRHYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQ
Template Known Secondary structure  BTTB

SB




TT



GGG


TTS
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   359360. ........370.........
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Query Sequence  KEG. . . NTLVIVTADHAHASQIVA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RDGTRARTNIIVVSDHGMAEVAPGHAISVEDIAPPQIATAITDGQVIGFEPLPGQQAAAEASVLGAHDHYDCWRKAELPA
Template Known Secondary structure  T
GGG
S



TT
S
TTT


BS
TT
STTGGGS
G
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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   380.........390.........400.........410.. .......420...... ...430.........440....
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Query Sequence  . . PDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQE. . . . . . . . . . . HTGSQLRIAAYGPH. . AANVVGLTDQTDLFYTMK
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Template Sequence  RWQYGSHPRIPSLVCQMHEGWDALFPDKLAKRAQRGTRGSHGYDPALPSMRAVFLAQGPDLAQGKTLPGFDNVDVYALMS
Template Known Secondary structure  GG

S
STTS
S
TT

S


S


S
TTSGGG
B
STTB
SS

GGG
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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   445....450
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Query Sequence  AALGLK
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Template Sequence  RLLGIP
Template Known Secondary structure  TT

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   403.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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