Job Description P76418 Confidence 3.43% Date Thu Jan 5 12:22:53 GMT 2012 Rank 86 Aligned Residues 48 % Identity 15% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		15	.	.	.	.	20	.	.	.																									.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	D	A	M	G	M	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	W	P	R	S	R	V	K	A	H	F	G	W	I	D	R	F	L	P	G	P	K	E	N	N	A	A	C	Y	F	N	R	A	E	F	T	D	D
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	D	A	A	G	R	L	A	N	W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P	F	A	T	P	E	E	F	F	L	K	W	P	A	A	R	F	E	L	P	A	F	D	P	R	T	I	S	S	A	G	P	L	Y	L	P	E	S	S
Template Known Secondary structure				S		S		B		T	T	S	S	T	T			S			S												T																		B				S			G	G	G			S		S		S	S	B	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions