Job Description P25666 Confidence 5.42% Date Thu Jan 5 11:42:14 GMT 2012 Rank 31 Aligned Residues 145 % Identity 14% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		S	Y	F	E	R	L	A	A	L	E	N	E	M	I	I	F	T	S	P	.	.	.	D	L	K	P	R	V	E	A	I	R	N	G	K	P	T	T	V	I	V	I	D	I	K	K	K	F	R	Y	I	R	S	R	I	E	K	I	Q	K	D	E	S	F	T	N	R	L	E	P	R	Q	L	K	N	P	E	Y	W	S
Query Conservation																					.	.	.
Alig confidence																					.	.	.															.	.								.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																																						.	.								.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		K	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	T	H	V	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	.	.	K	V	L	L	H	A	D	.	.	.	.	.	.	.	.	L	V	N	G	L	K	N	D	D	Y	A	I	D	F	L	C	T	E	I	C	P	D	.	.	.	.	.
Template Known Secondary structure								T	T	S	S								S			T	T	T											T	T		.	.						G	G	.	.	.	.	.	.	.	.	G			T				S										T	T			S	.	.	.	.	.
Template Predicted Secondary structure																																						.	.								.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60									.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Y	V	L	V	C	N	L	K	A	Y	F	V	N	K	A	I	N	M	G	L	V	K	T	P	L	V	A	W	I	D	F	G	Y	C	H	K	P	N	V	T	R	G	L	K	I	W	D	F	P	F	D	E	S	K	M	H	L	F	T	I	K	K	G	L	T	V	T	S	Q	Q	Q	V	F	D	F	M	I	G
Query Conservation
Alig confidence		.	.	.	.																																					.	.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.	.																																					.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		.	.	.	.	G	I	I	S	T	R	G	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	.	.	.	.	.	.	.	.	.	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	P	E	Q	V	Q	K	M	T	Q	K	L	.	.
Template Known Secondary structure		.	.	.	.					S											T	T											S									.	.	.	.	.	.	.	.	.									S							T	T													.	.
Template Predicted Secondary structure		.	.	.	.																																					.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
						83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	V	Y	I	I	G	G	A	I	V	G	S	Q	H	K	W	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	I	P	V	I	A	G	G	L	I	E	T	S	E	Q	V	N	Q
Template Known Secondary structure									S	S			S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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