Job Description P25522 Confidence 98.50% Date Thu Jan 5 11:41:55 GMT 2012 Rank 282 Aligned Residues 162 % Identity 19% Template c1tndA_ PDB info PDB header:binding protein(gtp) Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s Resolution 2.20 Å

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		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	V	V	I	A	G	R	P	N	A	G	K	S	S	L	L	N	A	L	A	G	R	E	A	A	I	V	T	D	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	L	L	L	L	G	A	G	E	S	G	K	S	T	I	V	K	Q	M	K	I	I	H	Q	D	G	Y	S	L	E	E	C	L	E	F	I	A	I	I	Y	G	N	T	L	Q	S	I	L	A	I	V	R	A	M	T	T	L	N	I	Q	Y	G	D	S	A	R	Q	D	D	A	R	K	L	M	H	M	A	D	T
Template Known Secondary structure									S	T	T	S	S													S																																	T	T				S	S	T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
																																																																			249	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	R	D	V	L	R	E	H	I	H	I	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	E	G	T	M	P	K	E	M	S	D	I	I	Q	R	L	W	K	D	S	G	I	Q	A	C	F	D	R	A	S	E	Y	Q	L	N	D	S	A	G	Y	Y	L	S	D	L	E	R	L	V	T	P	G	Y	V	P	T	E	Q	D	V	L	R	S	R	V	K	T	T	G	I	I	E	T	Q	F	S	F	K	D
Template Known Secondary structure		S		T	T																S								T	T	G	G	G	S				T	T						T	T					T	S	T	T																	S									T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.												.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		M	P	L	H	I	I	D	T	A	G	L	R	E	A	S	D	E	V	E	R	I	G	I	E	R	A	W	Q	E	I	E	Q	A	D	R	V	L	F	M	V	D	G	T	T	.	.	.	.	.	.	.	.	.	.	.	T	D	A	V	D	P	A	E	I	W	P	E	F	I	A	R	.	L	P	A	K	L	P	I	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		L	N	F	R	M	F	D	V	G	G	Q	R	S	E	R	.	.	.	.	.	.	.	.	K	K	W	I	H	C	F	E	G	V	T	C	I	I	F	I	A	A	L	S	A	Y	D	M	V	L	V	E	D	D	E	V	N	R	M	H	E	S	L	H	L	F	N	S	I	C	N	H	R	Y	F	A	T	T	S	I	V
Template Known Secondary structure												S					.	.	.	.	.	.	.	.	G	G	G	G	G	G		T	T		S								G	G	G	G	G		B		S	S		T	T	S	B														T		S	G	G	G	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.									.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																																		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	R	N	K	A	D	I	T	G	E	T	L	G	M	S	E	V	N	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	I	R	L	S	A	R	T	G	E	G	V	D	V	L	R	N	H	L	K	Q	S	M	G	F
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	L	N	K	K	D	V	F	S	E	K	I	K	K	A	H	L	S	I	C	F	P	D	Y	N	G	P	N	T	Y	E	D	A	G	N	Y	I	K	V	Q	F	L	E	L	N	M	R	R	D	V	K	E	I	Y	S	H	M	T	C	A	T	D	T	Q	N	V	K	F	V	F	D	A	V	T	D	I	I	I	K
Template Known Secondary structure															T	T	S		G	G	G	T		T	T			S																	T	T		T	T	B	T	T	B									T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		379	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	N	M	E	G	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	L	K	D	C	G	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions