Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 19 Aligned Residues 221 % Identity 18% Template c3no0B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain Resolution 1.30 Å

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		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.			.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		V	T	I	V	L	S	Q	M	G	W	V	R	S	A	K	G	H	D	I	D	A	P	G	L	N	Y	K	A	G	D	S	F	K	A	A	V	K	G	K	S	N	Q	P	V	V	F	V	D	S	T	G	R	S	Y	A	I	D	P	I	T	L	P	S	A	R	G	Q	.	.	G	E	P	L	T	G	K	L	T	L	P
Query Conservation																																																																					.	.
Alig confidence															.	.	.	.	.	.	.	.																																															.	.		.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Sequence		I	T	V	A	V	L	Q	D	G	S	I	I	P	.	.	.	.	.	.	.	.	V	E	E	L	P	L	E	K	A	P	V	V	N	I	L	R	V	P	F	T	E	G	L	F	L	V	S	N	R	G	R	V	Y	W	I	A	G	S	Q	A	L	Q	G	S	K	V	S	L	K	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure								T	T	S					.	.	.	.	.	.	.	.	G	G	G	G	G	G			S										T	T	S							T	T	S							S					T	S						S	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.									.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.										.
		578	.	580	.	.	.	.	.	.	.	.	.	590		.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		P	G	A	T	V	D	H	M	L	M	E	S	D	.	D	Q	K	L	L	M	A	S	D	A	G	Y	G	F	V	C	T	F	N	D	L	V	A	R	N	R	A	G	K	A	L	I	T	L	P	E	N	A	H	V	M	P	P	V	V	I	E	D	A	S	D	M	L	L	A	I	T	Q	A	G	R	M	L	M	F	P
Query Conservation															.
Alig confidence															.																						.																								.
Template Conservation																																					.																								.
Template Sequence		R	E	E	K	I	V	G	A	F	I	R	E	K	F	G	N	R	L	L	L	A	T	K	K	G	Y	V	K	K	I	P	L	A	E	F	.	E	Y	K	A	Q	G	M	P	I	I	K	L	T	E	G	D	E	V	V	S	I	A	S	.	S	V	D	E	T	H	I	L	L	F	T	K	K	G	R	V	A	R	F	S
Template Known Secondary structure		T	T									T	T	T	S		S							T	T	S							G	G	G	T	.	T	T		S	T	T				S	B			T	T									.			T	T								T	T	S
Template Predicted Secondary structure																																					.																								.
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.		.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
		657	.	.	660	.	.	.	.	.		.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		V	S	D	L	P	Q	L	S	K	.	G	K	G	N	K	I	I	N	I	P	S	A	E	A	A	R	G	E	D	G	L	A	Q	L	Y	V	L	P	P	Q	S	T	L	T	I	H	V	G	K	R	K	I	K	L	R	P	E	E	L	Q	K	V	T	G	E	R	G	R	R	G	T	L	M	R	G	L	Q	R	I	D
Query Conservation											.
Alig confidence											.															.	.	.	.	.	.																																		.										.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																																		.										.	.	.	.	.
Template Sequence		V	R	E	V	P	P	S	T	P	G	A	R	G	V	Q	G	I	K	L	E	K	N	D	E	.	.	.	.	.	.	T	S	G	L	R	I	W	N	G	E	P	Y	L	L	V	I	T	A	K	G	R	V	K	K	I	S	H	E	E	I	P	K	T	.	N	R	G	V	K	G	T	E	V	.	.	.	.	.	S	G
Template Known Secondary structure		G	G	G	S		B			T	T	S	B					B				T	T			.	.	.	.	.	.									S		S							T	T	S							G	G	G	S				.		T	T	B						.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.																																		.										.	.	.	.	.
Template SS confidence
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660							.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.		.	.	.	.	.	.	700	.	.						.	.
		736	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	E	I	D	S	P	R	R	A	S	S	G	D	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	D	T	L	V	D	L	I	P	I	K	E	E	V	E
Template Known Secondary structure		S	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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