Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 14 Aligned Residues 249 % Identity 20% Template c3l6vA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the xanthomonas campestris gyrase a c-2 terminal domain Resolution 2.19 Å

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		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.									.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.
Query Sequence		D	M	L	P	S	E	P	V	T	I	V	L	S	Q	M	G	W	V	R	S	.	.	.	.	.	.	.	.	A	K	G	H	D	I	D	A	P	G	L	N	Y	K	A	G	D	S	F	K	A	A	V	K	G	K	S	N	Q	P	V	V	F	V	D	S	T	G	R	S	Y	A	I	D	P	I	T	L	P	S	A	R
Query Conservation																						.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	I	A	P	E	D	V	V	V	T	L	S	H	A	G	Y	A	K	R	Q	P	V	S	A	Y	R	A	Q	R	R	G	G	R	G	R	S	A	A	S	T	K	E	E	D	F	I	D	Q	L	W	L	V	N	T	H	D	T	L	L	T	F	T	S	S	G	K	V	F	W	L	P	V	H	Q	L	P	E	A	G
Template Known Secondary structure															S	S														T							S						S													T	T								T	T	S							G	G	G	S		B
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		565	.			.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590				.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																									.	.	.
Query SS confidence				.	.																									.	.	.
Query Sequence		G	Q	.	.	G	E	P	L	T	G	K	L	T	L	P	P	G	A	T	V	D	H	M	L	M	E	S	D	.	.	.	D	Q	K	L	L	M	A	S	D	A	G	Y	G	F	V	C	T	F	N	D	L	V	A	R	N	R	A	G	K	A	L	I	T	L	P	E	N	A	H	V	M	P	P	V	V	I	E	D	A
Query Conservation				.	.																									.	.	.
Alig confidence				.	.																									.	.	.																																																.
Template Conservation																																																																																.
Template Sequence		S	N	A	R	G	R	P	I	I	N	W	I	P	L	E	S	G	E	R	V	Q	A	V	L	P	V	R	E	Y	A	D	N	R	Y	V	F	M	A	T	R	N	G	T	V	K	K	T	P	L	S	E	F	A	F	R	L	A	R	G	K	I	A	I	N	L	D	E	G	D	A	L	V	G	V	A	L	T	D	.	G
Template Known Secondary structure		T	T	S					G	G	G	S					T	T										S				T	T								T	T	S							G	G	G	G		S			T	T				S	S				T	T											.	S
Template Predicted Secondary structure																																																																																.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.		.
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.		.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	D	M	L	L	A	I	T	Q	A	G	R	M	L	M	F	P	V	S	D	L	P	Q	L	S	K	.	G	K	G	N	K	I	I	N	I	P	S	A	E	A	A	R	G	E	D	G	L	A	Q	L	Y	V	L	P	P	Q	S	T	L	T	I	H	V	G	K	R	K	I	K	L	R	P	E	E	L	Q	K	V	T
Query Conservation																												.
Alig confidence																												.															.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		D	R	D	V	L	L	F	A	S	N	G	K	T	V	R	F	G	E	S	T	V	R	S	M	G	R	T	A	T	G	V	R	G	I	R	L	A	K	G	E	E	.	.	.	.	.	.	V	V	S	L	I	V	S	E	R	A	A	Y	I	L	T	A	T	E	N	G	Y	G	K	R	T	P	L	A	E	Y	P	R	K
Template Known Secondary structure										T	T	S							G	G	G	S		B			T	T											T	T			.	.	.	.	.	.																		T	T	S							G	G	G	S			B
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730							.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	R	G	R	R	G	T	L	M	R	G	L	Q	R	I	D	R	V	E	I	D	S	P	R	R	A	S	S	G	D	S	E
Query Conservation
Alig confidence		.										.	.
Template Conservation		.										.	.
Template Sequence		.	G	R	G	T	Q	G	V	I	G	.	.	I	Q	T	T	E	R	N	G	K	L	V	R	A	V	L	L	G	S	T	D	E
Template Known Secondary structure		.		T	T	S					S	.	.	S				T	T	T		S									T	T
Template Predicted Secondary structure		.										.	.
Template SS confidence
			799	800	.	.	.	.	.	.	.			.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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