Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 5 Aligned Residues 475 % Identity 41% Template c3ifzA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	A	E	R	L	A	L	H	E	F	T	E	N	A	Y	L	N	Y	S	M	Y	V	I	M	D	R	A	L	P	F	I	G	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	N	A	S	A	K	F	K	K	S	A	R	T	V	G	D	V	L	G	K	Y	H	P	H	G	D	S	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	I	E	P	V	D	I	E	Q	E	M	Q	R	S	Y	I	D	Y	A	M	S	V	I	V	G	R	A	L	P	E	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	F	D	S	G	F	R	P	D	R	S	H	A	K	S	A	R	S	V	A	E	T	M	G	N	Y	H	P	H	G	D	A	S	I
Template Known Secondary structure																														S		B	T	T	T																	T			T	T	S																T		T	T		S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	A	M	V	L	M	A	Q	P	F	S	Y	R	Y	P	L	V	D	G	Q	G	N	W	G	A	P	D	D	P	K	S	F	A	A	M	R	Y	T	E	S	R	L	S	K	Y	S	E	L	L	L	S	E	L	G	Q	G	T	A	D	W	V	P	N	F	D	G	T	L	Q	E	P	K	M	L	P	A	R	L	P
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		Y	D	S	L	V	R	M	A	Q	P	W	S	L	R	Y	P	L	V	D	G	Q	G	N	F	G	S	P	.	G	N	D	P	P	A	A	M	R	Y	T	E	A	R	L	T	P	L	A	M	E	M	L	R	E	I	D	E	E	T	V	D	F	I	P	N	Y	D	G	R	V	Q	E	P	T	V	L	P	S	R	F	P
Template Known Secondary structure								T	T		T	T	T		S	S		S					S					S	.	S	S						T	T	T													S	T	T	T	T	T	T		S						T	T	S	S	S				S	S				S	S
Template Predicted Secondary structure																													.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		N	I	L	L	N	G	T	T	G	I	A	V	G	M	A	T	D	I	P	P	H	N	L	R	E	V	A	Q	A	A	I	A	L	I	D	Q	P	K	T	T	L	D	Q	.	.	.	.	L	L	D	I	V	Q	G	P	D	Y	P	T	E	A	E	I	I	T	S	R	A	E	I	R	K	I	Y	E	N	G	R	G	S
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.															.
Template Conservation																																																															.
Template Sequence		N	L	L	A	N	G	S	G	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	R	E	L	A	D	A	V	F	W	A	L	E	N	H	D	A	D	E	E	E	T	L	A	A	V	M	G	R	V	K	G	P	D	F	P	T	A	G	.	L	I	V	G	S	Q	G	T	A	D	A	Y	K	T	G	R	G	S
Template Known Secondary structure												S	S	S								B																T	T																S	B			T	T			.					S										S
Template Predicted Secondary structure																																																															.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		239	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		V	R	M	R	A	V	W	K	K	.	E	D	G	A	V	V	I	S	A	L	P	H	Q	V	S	G	A	R	V	L	E	Q	I	A	A	Q	M	R	N	K	K	L	P	M	V	D	D	L	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	P	R	S	N	R	V	D	M	D	Q	V	M	N	H	L	F	A
Query Conservation											.
Alig confidence											.																																																										.
Template Conservation																																																																					.
Template Sequence		I	R	M	R	G	V	V	E	V	E	E	D	S	R	L	V	I	T	E	L	P	Y	Q	V	N	H	D	N	F	I	T	S	I	A	E	Q	V	R	D	G	K	L	A	G	I	S	N	I	E	D	Q	S	S	D	R	V	G	L	R	I	V	I	E	I	K	R	D	.	A	V	A	K	V	V	I	N	N	L	Y	K
Template Known Secondary structure																							T	T															T	T	T	T	T		S									B	T	T	T	B									S	S	.			S	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	D	L	E	K	S	Y	R	I	N	L	N	M	I	G	L	D	G	R	P	A	V	K	N	L	L	E	I	L	S	E	W	L	V	F	R	R	D	T	V	R	R	R	L	N	Y	R	L	E	K	V	L	K	R	L	H	I	L	E	G	L	L	V	A	F	L	N	I	D	E	V	I	E	I	I	R	N	E	D
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		H	T	Q	L	Q	T	S	F	G	A	N	M	L	A	I	V	.	D	G	V	P	R	T	L	R	L	D	Q	L	I	R	Y	Y	V	D	H	Q	L	D	V	I	V	R	R	T	T	Y	R	L	R	K	A	N	E	R	A	H	I	L	R	G	L	V	K	A	L	D	A	L	D	E	V	I	A	L	I	R	A	S	E
Template Known Secondary structure			S	T	T													.	T	T																																																	T												S
Template Predicted Secondary structure																		.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		398				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		E	.	.	.	P	K	P	A	L	M	S	R	F	G	L	T	E	T	Q	A	E	A	I	L	E	L	K	L	R	H	L	A	K	L	E	E	M	K	I	R	G	E	Q	S	E	L	E	K	E	R	D	Q	L	Q	G	I	L	A	S	E	R	K	M	N	N	L	L	K	K	E	L	Q	A	D	A	Q	A	Y	G	D
Query Conservation			.	.	.
Alig confidence			.	.	.
Template Conservation
Template Sequence		T	V	D	I	A	R	A	G	L	I	E	L	L	D	I	D	E	I	Q	A	Q	A	I	L	D	M	Q	L	R	R	L	A	A	L	E	R	Q	R	I	I	D	D	L	A	K	I	E	A	E	I	A	D	L	E	D	I	L	A	K	P	E	R	Q	R	G	I	V	R	D	E	L	A	E	I	V	D	R	H	G	D
Template Known Secondary structure		S													T														G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		475	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	R	S	P	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	R	T	R	I	I
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.