Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 3 Aligned Residues 489 % Identity 67% Template c2xkjE_ PDB info PDB header:isomerase Chain: E: PDB Molecule:topoisomerase iv; PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate) Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	D	M	A	E	R	L	A	L	H	E	F	T	E	N	A	Y	L	N	Y	S	M	Y	V	I	M	D	R	A	L	P	F	I	G	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	N	A	S	A	K	F	K	K	S	A	R	T	V	G	D	V	L	G	K	Y	H	P	H	G	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	L	A	D	E	N	R	S	V	A	E	F	T	E	Q	A	Y	L	N	Y	A	M	Y	V	I	M	D	R	A	L	P	H	I	S	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	K	S	S	G	K	P	K	K	S	A	R	T	V	G	D	V	L	G	K	Y	H	P	H	G	D	S
Template Known Secondary structure		G	G	G																											T			B	T	T	T	S															T	T			T	T	S																T			S
Template Predicted Secondary structure
Template SS confidence
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	Y	E	A	M	V	L	M	A	Q	P	F	S	Y	R	Y	P	L	V	D	G	Q	G	N	W	G	A	P	D	D	P	K	S	F	A	A	M	R	Y	T	E	S	R	L	S	K	Y	S	E	L	L	L	S	E	L	G	Q	G	T	A	D	W	V	P	N	F	D	G	T	L	Q	E	P	K	M	L	P	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	Y	E	A	M	V	L	M	A	Q	P	F	S	Y	R	Y	P	L	I	E	G	Q	G	N	W	G	S	P	D	D	P	K	S	F	A	A	M	R	Y	T	E	A	K	L	S	A	Y	S	E	L	L	L	S	E	L	G	Q	G	T	S	E	W	Q	D	N	F	D	G	S	L	K	E	P	I	T	L	P	A	R
Template Known Secondary structure													T	T	T		S	S		S				S	S				B	T	T	B	T	T					T	T	T							G	G	G					T	T	T	T	T	T		S						T	T	S	S	S				S	S				S
Template Predicted Secondary structure
Template SS confidence
		1085	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	N	I	L	L	N	G	T	T	G	I	A	V	G	M	A	T	D	I	P	P	H	N	L	R	E	V	A	Q	A	A	I	A	L	I	D	Q	P	K	T	T	L	D	Q	L	L	D	I	V	Q	G	P	D	Y	P	T	E	A	E	I	I	T	S	R	A	E	I	R	K	I	Y	E	N	G	R	G	S	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	N	I	L	L	N	G	T	T	G	I	A	V	G	M	A	T	D	I	P	P	H	N	L	R	E	V	V	K	G	T	I	A	L	I	R	N	P	Q	T	S	D	E	K	L	A	E	Y	I	P	A	P	D	L	P	T	K	A	E	I	I	T	P	P	E	E	L	L	K	I	Q	T	T	G	R	G	S	Y	R
Template Known Secondary structure		S													T	T																								T	T												S				S	S	S																	S
Template Predicted Secondary structure
Template SS confidence
		1165	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	A	V	W	K	K	E	D	G	A	V	V	I	S	A	L	P	H	Q	V	S	G	A	R	V	L	E	Q	I	A	A	Q	M	R	N	K	K	L	P	M	V	D	D	L	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	P	R	S	N	R	V	D	M	D	Q	V	M	N	H	L	F	A	T	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	A	V	Y	T	I	E	K	N	E	I	V	I	T	E	L	P	Y	Q	V	S	G	S	K	V	I	T	Q	I	A	D	Q	M	Q	A	K	K	L	P	L	V	V	D	V	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	L	R	S	N	R	I	D	A	E	A	V	M	S	H	L	F	A	T	T	D
Template Known Secondary structure										T	T									T	T																T	T			T	T										S	S		S	S							S		T	T	S													S	T
Template Predicted Secondary structure
Template SS confidence
		1245	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	S	Y	R	I	N	L	N	M	I	G	L	D	G	R	P	A	V	K	N	L	L	E	I	L	S	E	W	L	V	F	R	R	D	T	V	R	R	R	L	N	Y	R	L	E	K	V	L	K	R	L	H	I	L	E	G	L	L	V	A	F	L	N	I	D	E	V	I	E	I	I	R	N	E	D	E	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	S	S	Y	R	V	N	L	N	M	I	G	E	D	G	R	P	Q	V	K	S	I	R	R	I	L	L	E	W	I	E	I	R	K	K	T	V	T	R	R	L	Q	Y	H	L	N	R	I	E	K	R	L	H	I	L	A	G	L	L	I	A	Y	L	D	I	D	T	V	I	R	I	I	R	E	E	D	Q	P	K
Template Known Secondary structure		T													T	T	S																																																T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		1325	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	M	S	R	F	G	L	T	E	T	Q	A	E	A	I	L	E	L	K	L	R	H	L	A	K	L	E	E	M	K	I	R	G	E	Q	S	E	L	E	K	E	R	D	Q	L	Q	G	I	L	A	S	E	R	K	M	N	N	L	L	K	K	E	L	Q	A	D	A	Q	A	Y	G	D	D	R	R	S	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	L	M	E	H	F	N	I	D	E	I	Q	A	E	A	I	L	E	L	K	L	R	H	L	A	K	L	E	E	M	E	I	R	H	E	Q	D	E	L	S	A	K	A	A	I	I	R	E	Q	L	E	N	P	E	S	L	K	N	L	I	I	S	E	L	K	E	D	A	K	K	F	G	D	E	R	R	S	P	I
Template Known Secondary structure									T												S																																																									S	S		B
Template Predicted Secondary structure
Template SS confidence
		1405	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.
		481	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	R	E	E	A	K	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	R	A	E	A	V	Q	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1485	.	.	.	.	1490	.	.	.