Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 7 Aligned Residues 452 % Identity 47% Template c2xcqA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase Resolution 2.98 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	V	I	M	D	R	A	L	P	F	I	G	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	N	A	S	A	K	F	K	K	S	A	R	T	V	G	D	V	L	G	K	Y	H	P	H	G	D	S	A	C	Y	E	A	M	V	L	M	A	Q	P	F	S	Y	R	Y	P	L	V	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	V	I	V	A	R	A	L	P	D	V	R	D	G	L	K	P	V	H	R	R	I	L	Y	G	L	N	E	Q	G	M	T	P	D	K	S	Y	K	K	S	A	R	I	V	G	D	V	M	G	K	Y	H	P	H	G	D	S	S	I	Y	E	A	M	V	R	M	A	Q	D	F	S	Y	R	Y	P	L	V	D	G
Template Known Secondary structure								T	T	S		B	T	T	T																T	T			T	T	S																T			S												T	T		T	T	T		S	S		S
Template Predicted Secondary structure
Template SS confidence
		1027	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	N	W	G	A	P	D	D	P	K	S	F	A	A	M	R	Y	T	E	S	R	L	S	K	Y	S	E	L	L	L	S	E	L	G	Q	G	T	A	D	W	V	P	N	F	D	G	T	L	Q	E	P	K	M	L	P	A	R	L	P	N	I	L	L	N	G	T	T	G	I	A	V	G	M	A	T	D	I	P	P
Query Conservation
Alig confidence									.																																																																.	.	.
Template Conservation									.																																																																.	.	.
Template Sequence		Q	G	N	F	G	S	M	.	D	G	D	G	A	A	A	M	R	Y	T	E	A	R	M	T	K	I	T	L	E	L	L	R	D	I	N	K	D	T	I	D	F	I	D	N	Y	D	G	N	E	R	E	P	S	V	L	P	A	R	F	P	N	L	L	A	N	G	A	S	G	I	A	.	.	.	A	T	N	I	P	P
Template Known Secondary structure			S		B			T	.	T				B			T	T	T														T	T	T	T	S	S		S						T	T	S	S	S				S	S				S	S								B					.	.	.			B	B
Template Predicted Secondary structure									.																																																																.	.	.
Template SS confidence
		1107	.	.	1110	.	.	.		.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.				.	.	.	1180	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		H	N	L	R	E	V	A	Q	A	A	I	A	L	I	D	Q	P	K	T	T	L	D	Q	L	L	D	I	V	Q	G	P	D	Y	P	T	E	A	E	I	I	T	S	R	A	E	I	R	K	I	Y	E	N	G	R	G	S	V	R	M	R	A	V	W	K	K	E	.	.	.	.	.	D	G	A	V	V	I	S	A	L
Query Conservation																																																																				.	.	.	.	.
Alig confidence																																										.																										.	.	.	.	.
Template Conservation																																										.
Template Sequence		H	N	L	T	E	L	I	N	G	V	L	S	L	S	K	N	P	D	I	S	I	A	E	L	M	E	D	I	E	G	P	D	F	P	T	A	G	L	I	L	.	G	K	S	G	I	R	R	A	Y	E	T	G	R	G	S	I	Q	M	R	S	R	A	V	I	E	E	R	G	G	G	R	Q	R	I	V	V	T	E	I
Template Known Secondary structure															T	T		T	T												S				T	T						.											T	S																S	T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		1186	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.		.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	Q	V	S	G	A	R	V	L	E	Q	I	A	A	Q	M	R	N	K	K	L	P	M	V	D	D	L	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	P	R	S	N	R	V	D	M	D	Q	V	M	N	H	L	F	A	T	T	D	L	E	K	S	Y	R	I	N	L	N	M	I	G	L	D	G	R
Query Conservation
Alig confidence																																																	.																												.
Template Conservation																																																	.																												.
Template Sequence		P	F	Q	V	N	K	A	R	M	I	E	K	I	A	E	L	V	R	D	K	K	I	D	G	I	T	D	L	R	D	E	T	S	L	R	T	G	V	R	V	V	I	D	V	R	K	D	.	A	N	A	S	V	I	L	N	N	L	Y	K	Q	T	P	L	Q	T	S	F	G	V	N	M	I	A	L	.	V	N	G	R
Template Known Secondary structure			T	T																	T	S	S											B	G	G	G	B									T	T	.														S	T	T												.		T	T
Template Predicted Secondary structure																																																	.																												.
Template SS confidence
		1265	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.		.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.		.	1340	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		P	A	V	K	N	L	L	E	I	L	S	E	W	L	V	F	R	R	D	T	V	R	R	R	L	N	Y	R	L	E	K	V	L	K	R	L	H	I	L	E	G	L	L	V	A	F	L	N	I	D	E	V	I	E	I	I	R	N	E	D	E	.	.	.	P	K	P	A	L	M	S	R	F	G	L	T	E	T	Q	A
Query Conservation																																																															.	.	.
Alig confidence																																																															.	.	.
Template Conservation
Template Sequence		P	K	L	I	N	L	K	E	A	L	V	H	Y	L	E	H	Q	K	T	V	V	R	R	R	T	Q	Y	N	L	R	K	A	K	D	R	A	H	I	L	E	G	L	R	I	A	L	D	H	I	D	E	I	I	S	T	I	R	E	S	D	T	D	K	V	A	M	E	S	L	Q	Q	R	F	K	L	S	E	K	Q	A
Template Known Secondary structure																																																	T												S	S												S
Template Predicted Secondary structure
Template SS confidence
		1343	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	I	L	E	L	K	L	R	H	L	A	K	L	E	E	M	K	I	R	G	E	Q	S	E	L	E	K	E	R	D	Q	L	Q	G	I	L	A	S	E	R	K	M	N	N	L	L	K	K	E	L	Q	A	D	A	Q	A	Y	G	D	D	R	R	S	P	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	I	L	D	M	R	L	R	R	L	T	G	L	E	R	D	K	I	E	A	E	Y	N	E	L	L	N	Y	I	S	E	L	E	T	I	L	A	D	E	E	V	L	L	Q	L	V	R	D	E	L	T	E	I	R	D	R	F	G	D	D	R	R	T	E	I	Q
Template Known Secondary structure						T			G	G	G	G	S																										T																										S
Template Predicted Secondary structure
Template SS confidence
		1423	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.