Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 4 Aligned Residues 466 % Identity 46% Template c2wl2B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 Resolution 2.62 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	E	F	T	E	N	A	Y	L	N	Y	S	M	Y	V	I	M	D	R	A	L	P	F	I	G	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	N	A	S	A	K	F	K	K	S	A	R	T	V	G	D	V	L	G	K	Y	H	P	H	G	D	S	A	C	Y	E	A	M	V	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	E	E	L	K	S	S	Y	L	D	Y	A	M	S	V	I	V	G	R	A	L	P	D	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	N	V	L	G	N	D	W	N	K	A	Y	K	K	S	A	R	V	V	G	D	V	I	G	K	Y	H	P	H	G	D	S	A	V	Y	D	T	I	V	R	M
Template Known Secondary structure			T	G	G	G	T	T	S	S													S		B	T	T	T																	T			T	T	S																T			S			T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	P	F	S	Y	R	Y	P	L	V	D	G	Q	G	N	W	G	A	P	D	D	P	K	S	F	A	A	M	R	Y	T	E	S	R	L	S	K	Y	S	E	L	L	L	S	E	L	G	Q	G	T	A	D	W	V	P	N	F	D	G	T	L	Q	E	P	K	M	L	P	A	R	L	P	N	I	L	L	N	G	T
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		A	Q	P	F	S	L	R	Y	M	L	V	D	G	Q	G	N	F	G	S	I	.	D	G	D	S	A	A	A	M	R	Y	T	E	I	R	L	A	K	I	A	H	E	L	M	A	D	L	E	K	E	T	V	D	F	V	D	N	Y	D	G	T	E	K	I	P	D	V	M	P	T	K	I	P	N	L	L	V	N	G	S
Template Known Secondary structure				T	T	T		T	T		S					S					T	.	T							T	T	T													T	T	T	T	T	T	T		S						T	T	S	S					S	S				S	S
Template Predicted Secondary structure																						.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		T	G	I	A	V	G	M	A	T	D	I	P	P	H	N	L	R	E	V	A	Q	A	A	I	A	L	I	D	Q	P	K	T	T	L	D	Q	L	L	D	I	V	Q	G	P	D	Y	P	T	E	A	E	I	I	T	S	R	A	E	I	R	K	I	Y	E	N	G	R	G	S	V	R	M	R	A	V	W	K	K	.	.
Query Conservation																																																																																.	.
Alig confidence																																																				.																												.	.
Template Conservation																																																				.
Template Sequence		S	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	T	E	V	I	N	G	C	L	A	Y	I	D	D	E	D	I	S	I	E	G	L	M	E	H	I	P	G	P	D	F	P	T	A	A	.	I	I	N	G	R	R	G	I	E	E	A	Y	R	T	G	R	G	K	V	Y	I	R	A	R	A	E	V	E	V
Template Known Secondary structure						T	T																						T		T	T							T	T	T			S				T	T			.					S										S
Template Predicted Secondary structure																																																				.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
						248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	E	D	G	A	V	V	I	S	A	L	P	H	Q	V	S	G	A	R	V	L	E	Q	I	A	A	Q	M	R	N	K	K	L	P	M	V	D	D	L	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	P	R	S	N	R	V	D	M	D	Q	V	M	N	H	L	F	A	T	T	D	L	E	K
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																															.											.
Template Conservation																																																				.											.
Template Sequence		D	A	K	T	G	R	E	T	I	I	V	H	E	I	P	Y	Q	V	N	K	A	R	L	I	E	K	I	A	E	L	V	K	E	K	R	V	E	G	I	S	A	L	R	D	E	S	D	K	D	G	.	M	R	I	V	I	E	V	K	R	D	.	A	V	G	E	V	V	L	N	N	L	Y	S	Q	T	Q	L	Q	V
Template Known Secondary structure			T	T	T												T	T																T	T	S	S											B	T	T	B	.									T	T	.	S													S	T	T
Template Predicted Secondary structure																																																				.											.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		S	Y	R	I	N	L	N	M	I	G	L	D	G	R	P	A	V	K	N	L	L	E	I	L	S	E	W	L	V	F	R	R	D	T	V	R	R	R	L	N	Y	R	L	E	K	V	L	K	R	L	H	I	L	E	G	L	L	V	A	F	L	N	I	D	E	V	I	E	I	I	R	N	E	.	.	.	D	E	P	K
Query Conservation																																																																											.	.	.
Alig confidence												.																																																															.	.	.
Template Conservation												.
Template Sequence		S	F	G	I	N	M	V	A	L	H	.	H	G	Q	P	K	I	M	N	L	K	D	I	I	A	A	F	V	R	H	R	R	E	V	V	T	R	R	T	I	F	E	L	R	K	A	R	D	R	A	H	I	L	E	A	L	A	V	A	L	A	N	I	D	P	I	I	E	L	I	R	H	A	P	T	P	A	E	A	K
Template Known Secondary structure												.	T	T																																																	T											S	S	S
Template Predicted Secondary structure												.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		401	.	.	.	.	.																															.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	L	M	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	L	T	E	T	Q	A	E	A	I	L	E	L	K	L	R	H	L	A	K	L	E	E	M	K	I	R	G	E	Q	S	E	L	E	K	E	R	D	Q	L	Q	G	I
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	L	V	A	N	P	W	Q	L	G	N	V	A	A	M	L	E	D	A	A	R	P	E	W	L	E	P	E	F	G	V	R	D	G	L	Y	Y	L	T	E	Q	Q	A	Q	A	I	L	D	L	R	L	Q	K	L	T	G	L	E	H	E	K	L	L	D	E	Y	K	E	L	L	D	Q	I	A	E	L	L	R	I
Template Known Secondary structure							S						T								T	T	S		T	T			T	T	S	B			T	T	S		B											T	S		G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	E	R	K	M	N	N	L	L	K	K	E	L	Q	A	D	A	Q	A	Y	G	D	D	R	R	S	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	S	A	D	R	L	M	E	V	I	R	E	E	L	E	L	V	R	E	Q	F	G	D	K	R	R	T	E	I
Template Known Secondary structure																													S
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.