Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 9 Aligned Residues 438 % Identity 42% Template c2inrA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus Resolution 2.80 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	F	I	G	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	N	A	S	A	K	F	K	K	S	A	R	T	V	G	D	V	L	G	K	Y	H	P	H	G	D	S	A	C	Y	E	A	M	V	L	M	A	Q	P	F	S	Y	R	Y	P	L	V	D	G	Q	G	N	W	G	A	P
Query Conservation
Alig confidence																																																		.	.	.
Template Conservation																																																		.	.	.
Template Sequence		A	L	P	D	V	R	D	G	L	K	P	V	Q	R	R	I	L	Y	A	M	Y	S	S	G	N	T	H	D	K	N	F	R	K	S	A	K	T	V	G	D	V	I	G	Q	Y	H	P	S	.	.	.	S	V	Y	E	A	M	V	R	L	S	Q	D	W	K	L	R	H	V	L	I	E	M	H	G	N	N	G	S	I
Template Known Secondary structure					B	T	T	T																	T			S	S	S																T				.	.	.									T	T		T	T	T		S	S		S					S					T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	P	K	S	F	A	A	M	R	Y	T	E	S	R	L	S	K	Y	S	E	L	L	L	S	E	L	G	Q	G	T	A	D	W	V	P	N	F	D	G	T	L	Q	E	P	K	M	L	P	A	R	L	P	N	I	L	L	N	G	T	T	G	I	A	V	G	M	A	T	D	I	P	P	H	N	L	R	E	V	A
Query Conservation
Alig confidence		.																																																															.	.
Template Conservation		.																																																															.	.
Template Sequence		.	D	N	D	P	P	A	A	M	R	Y	T	E	A	K	L	S	L	L	A	E	E	L	L	R	D	I	N	K	E	T	V	S	F	I	P	N	Y	D	D	T	T	L	E	P	M	V	L	P	S	R	F	P	N	L	L	V	N	G	S	T	G	I	.	.	G	Y	A	T	D	I	P	P	H	N	L	A	E	V	I
Template Known Secondary structure		.	T							T	T	T							T	T					S	T	T	T	T	S	S		S						T	T	S	S	S				S	S				S	S												.	.									B
Template Predicted Secondary structure		.																																																															.	.
Template SS confidence
			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		Q	A	A	I	A	L	I	D	Q	P	K	T	T	L	D	Q	L	L	D	I	V	Q	G	P	D	Y	P	T	E	A	E	I	I	T	S	R	A	E	I	R	K	I	Y	E	N	G	R	G	S	V	R	M	R	A	V	W	K	K	E	D	.	G	A	V	V	I	S	A	L	P	H	Q	V	S	G	A	R	V	L	E
Query Conservation																																																														.
Alig confidence																																.																														.
Template Conservation																																.
Template Sequence		Q	A	T	L	K	Y	I	D	N	P	D	I	T	V	N	Q	L	M	K	Y	I	K	G	P	D	F	P	T	G	G	.	I	I	Q	G	I	D	G	I	K	K	A	Y	E	S	G	K	G	R	I	I	V	R	S	K	V	E	E	E	T	R	K	Q	L	I	I	T	E	I	P	Y	E	V	N	K	S	S	L	V	K
Template Known Secondary structure											T	T							T	T	T			S	B			T	T			.															S																									T	T
Template Predicted Secondary structure																																.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	A	A	Q	M	R	N	K	K	L	P	M	V	D	D	L	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	P	R	S	N	R	V	D	M	D	Q	V	M	N	H	L	F	A	T	T	D	L	E	K	S	Y	R	I	N	L	N	M	I	G	L	D	G	R	P	A	V	K	N	L	L	E	I	L	S
Query Conservation
Alig confidence												.	.	.													.										.	.	.	.	.	.	.																								.
Template Conservation												.	.	.													.										.	.	.	.	.	.	.																								.
Template Sequence		R	I	D	E	L	R	A	D	K	K	.	.	.	V	D	E	V	R	D	E	T	D	R	T	G	.	L	R	I	A	I	E	L	E	S	.	.	.	.	.	.	.	I	K	N	Y	L	Y	K	N	S	D	L	Q	I	S	Y	N	F	N	M	V	A	I	S	.	D	G	R	P	K	L	M	G	I	R	Q	I	I	D
Template Known Secondary structure										T	S	.	.	.									B	T	T	B	.										.	.	.	.	.	.	.						T	T	S	S	T	T													.	T	T
Template Predicted Secondary structure												.	.	.													.										.	.	.	.	.	.	.																								.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.								.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		E	W	L	V	F	R	R	D	T	V	R	R	R	L	N	Y	R	L	E	K	V	L	K	R	L	H	I	L	E	G	L	L	V	A	F	L	N	I	D	E	V	I	E	I	I	R	N	E	.	.	.	D	E	P	K	P	A	L	M	S	R	F	G	L	T	E	T	Q	A	E	A	I	L	E	L	K	L	R	H	L
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.
Template Conservation
Template Sequence		S	Y	L	N	H	Q	I	E	V	V	A	N	R	T	K	F	E	L	D	N	A	E	K	R	M	H	I	V	E	G	L	I	K	A	L	S	I	L	D	K	V	I	E	L	I	R	S	S	K	N	K	R	D	A	K	E	N	L	I	E	V	Y	E	F	T	E	E	Q	A	E	A	I	V	M	L	Q	L	Y	R	L
Template Known Secondary structure																																						S													S										T	T	S	S											T			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	E	E	M	K	I	R	G	E	Q	S	E	L	E	K	E	R	D	Q	L	Q	G	I	L	A	S	E	R	K	M	N	N	L	L	K	K	E	L	Q	A	D	A	Q	A	Y	G	D	D	R	R	S	P	L	Q	E	R	E	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	T	D	I	V	A	L	E	G	E	H	K	E	L	E	A	L	I	K	Q	L	R	H	I	L	D	N	H	D	A	L	L	N	V	I	K	E	E	L	N	E	I	K	K	K	F	K	S	E	R	L	S	L	I	E	A	E	I	E	E
Template Known Secondary structure		S	T	T																																																						S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.