Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 17 Aligned Residues 233 % Identity 18% Template c1zi0A_ PDB info PDB header:isomerase, dna bindng protein Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: a superhelical spiral in escherichia coli dna gyrase a c-2 terminal domain imparts unidirectional supercoiling bias Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.			.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		S	E	P	V	T	I	V	L	S	Q	M	G	W	V	R	S	A	K	G	H	D	I	D	A	P	G	L	N	Y	K	A	G	D	S	F	K	A	A	V	K	G	K	S	N	Q	P	V	V	F	V	D	S	T	G	R	S	Y	A	I	D	P	I	T	L	P	S	A	R	.	.	G	Q	G	E	P	L	T	G	K	L
Query Conservation																																																																						.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	D	V	V	V	T	L	S	H	Q	G	Y	V	K	Y	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	L	S	D	F	I	D	R	L	L	V	A	N	T	H	D	H	I	L	C	F	S	S	R	G	R	V	Y	S	M	K	V	Y	Q	L	P	E	A	T	R	G	A	R	G	R	P	I	V	N	L	L
Template Known Secondary structure											T	T	S							.	.	.	.	.	.	.	.	.	.	.	.													T	T								T	T	S							G	G	G	S					S	S	S					G	G	G	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.													.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590				.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		T	L	P	P	G	A	T	V	D	H	M	L	M	E	S	D	.	.	.	D	Q	K	L	L	M	A	S	D	A	G	Y	G	F	V	C	T	F	N	D	L	V	A	R	N	R	A	G	K	A	L	I	T	L	P	E	N	A	H	V	M	P	P	V	V	I	E	D	A	S	D	M	L	L	A	I	T	Q	A	G	R
Query Conservation																		.	.	.
Alig confidence																		.	.	.																																																	.
Template Conservation																																																																					.
Template Sequence		P	L	E	Q	D	E	R	I	T	A	I	L	P	V	T	E	F	E	E	G	V	K	V	F	M	A	T	A	N	G	T	V	K	K	T	V	L	T	E	F	N	R	L	R	T	A	G	K	V	A	I	K	L	V	D	G	D	E	L	I	G	V	D	L	T	S	G	.	E	D	E	V	M	L	F	S	A	E	G	K
Template Known Secondary structure					T	T										S				T	T								T	T	S							G	G	G	G	T	T			T	T				S	S				T	T											T	.	T								T	T	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.	.	.	700	.	.
		652	.	.	.	.	.	.	.	660	.	.	.	.	.		.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		M	L	M	F	P	V	S	D	L	P	Q	L	S	K	.	G	K	G	N	K	I	I	N	I	P	S	A	E	A	A	R	G	E	D	G	L	A	Q	L	Y	V	L	P	P	Q	S	T	L	T	I	H	V	G	K	R	K	I	K	L	R	P	E	E	L	Q	K	V	T	G	E	R	G	R	R	G	T	L	M	R	G
Query Conservation																.
Alig confidence																.															.	.	.	.	.	.																																		.										.	.
Template Conservation																															.	.	.	.	.	.																																		.										.	.
Template Sequence		V	V	R	F	K	E	S	S	V	R	A	M	G	C	N	T	T	G	V	R	G	I	R	L	G	E	G	D	K	.	.	.	.	.	.	V	V	S	L	I	V	P	R	G	D	G	A	I	L	T	A	T	Q	N	G	Y	G	K	R	T	A	V	A	E	Y	P	T	K	.	S	R	A	T	K	G	V	I	S	.	.
Template Known Secondary structure							G	G	G	S		B			T	T											T	T			.	.	.	.	.	.									S	S								T	T	S							G	G	G	S				.		T	T	S					S	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.																																		.										.	.
Template SS confidence
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.							.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.		.	.	.	.	.	770	.	.	.
		731	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	R	I	D	R	V	E	I	D	S	P	R	R	A	S	S	G	D	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	V	T	E	R	N	G	L	V	V	G	A	V	Q	V	D	D	C	D	Q
Template Known Secondary structure		S				T	T	T		S									T	T
Template Predicted Secondary structure
Template SS confidence
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions