Job Description P0AFI2 Confidence 100.00% Date Thu Jan 5 11:26:24 GMT 2012 Rank 12 Aligned Residues 434 % Identity 23% Template c1bjtA_ PDB info PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 Resolution 2.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		A	L	H	E	F	T	E	N	A	Y	L	N	Y	S	M	Y	V	I	M	D	R	A	L	P	F	I	G	D	G	L	K	P	V	Q	R	R	I	V	Y	A	M	S	E	L	G	L	N	A	S	A	K	F	K	K	S	A	R	T	V	G	D	V	.	.	L	G	K	Y	H	P	H	G	D	S	A	C	Y	E	A	M
Query Conservation																																																																.	.
Alig confidence																					.																											.	.	.														.	.						.
Template Conservation																					.																											.	.	.																					.
Template Sequence		Q	Y	E	P	F	I	N	K	E	L	I	L	F	S	L	A	D	N	I	.	R	S	I	P	N	V	L	D	G	F	K	P	G	Q	R	K	V	L	Y	G	C	F	K	K	N	L	.	.	.	K	S	E	L	K	V	A	Q	L	A	P	Y	V	S	E	C	T	A	Y	H	.	H	G	E	Q	S	L	A	Q	T	I
Template Known Secondary structure			S					T													.			S		B	T	T	T																	T		.	.	.		S																T			.	S	S	S
Template Predicted Secondary structure																					.																											.	.	.																					.
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.		.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700				.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720		.	.	.	.	.	.	.	.	.	730
		87	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure									.	.																		.
Query SS confidence									.	.																		.
Query Sequence		V	L	M	A	Q	P	F	.	.	S	Y	R	Y	P	L	V	D	G	Q	G	N	W	G	A	P	D	.	D	P	K	S	F	A	A	M	R	Y	T	E	S	R	L	S	K	Y	S	E	L	L	L	S	E	L	G	Q	G	T	A	D	W	V	P	N	F	D	G	T	L	Q	E	P	K	M	L	P	A	R	L	P	N
Query Conservation									.	.																		.
Alig confidence									.	.																		.																																			.
Template Conservation																																																															.
Template Sequence		I	G	L	A	Q	N	F	V	G	S	N	N	I	Y	L	L	L	P	N	G	A	F	G	T	R	A	T	G	G	K	D	A	A	A	A	R	Y	I	Y	T	E	L	N	K	L	T	R	K	I	F	H	P	A	D	D	P	L	Y	K	Y	I	.	Q	E	D	E	K	T	V	E	P	E	W	Y	L	P	I	L	P	M
Template Known Secondary structure								S	T	T	S		S	S		S					S					T	T	T	T	S	T	T				G	G	G							T	T					S		G	G	G	G	G	G	S				.			T	T						S					S	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.		.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	N	G	T	T	G	I	A	V	G	M	A	T	D	I	P	P	H	N	L	R	E	V	A	Q	A	A	I	A	L	I	D	Q	P	K	T	T	L	D	Q	L	L	D	I	V	Q	G	P	D	Y	P	T	E	A	E	I	I	T	S	R	A	E	I	R	K	I	Y	E	N	G	R	G	S	V	R	M	R	A
Query Conservation
Alig confidence																																								.	.					.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.					.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Sequence		I	L	V	N	G	A	E	G	I	G	T	G	W	S	T	Y	I	P	P	F	N	P	L	E	I	I	K	N	I	R	H	L	M	N	D	E	E	L	.	.	E	Q	M	H	.	.	.	.	.	P	W	F	R	G	W	T	G	T	I	.	.	.	.	.	.	.	.	.	E	E	I	E	P	L	R	Y	R	M	Y	G
Template Known Secondary structure					T							S	S								B														T	T				.	.					.	.	.	.	.	B			T	T			S			.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																								.	.					.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template SS confidence
		825	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.			.	.	.	.						.	.	.	870	.	.	.	.	.	.										.	.	.	880	.	.	.	.	.	.	.	.
		244	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure					.																														.	.
Query SS confidence					.																														.	.
Query Sequence		V	W	K	.	K	E	D	G	A	V	V	I	S	A	L	P	H	Q	V	S	G	A	R	V	L	E	Q	I	A	A	Q	M	R	.	.	N	K	K	L	P	M	V	D	D	L	R	D	E	S	D	H	E	N	P	T	R	L	V	I	V	P	R	S	N	R	V	D	M	D	Q	V	M	N	H	L	F	A	T	T	D
Query Conservation					.																														.	.
Alig confidence					.																														.	.																.			.											.
Template Conservation																																																				.			.											.
Template Sequence		R	I	E	Q	I	G	D	N	V	L	E	I	T	E	L	P	A	R	T	W	T	S	T	I	K	E	Y	L	L	L	G	L	S	G	N	D	K	I	K	P	W	I	K	D	M	E	E	Q	H	D	.	D	N	.	I	K	F	I	I	T	L	S	P	E	.	E	M	A	K	T	R	K	I	G	F	Y	E	R	F	K
Template Known Secondary structure								T	T									T	T															S			T	T	S												S	.	S	S	.											.														T	T
Template Predicted Secondary structure																																																				.			.											.
Template SS confidence
		889	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.		.	940		.	.	.	.	.	.	.	.	.	950		.	.	.	.	.	.	.	.	.	960	.	.	.	.	.
		321	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure									.															.																																													.
Query SS confidence									.															.																																													.
Query Sequence		L	E	K	S	Y	R	I	.	N	L	N	M	I	G	L	D	G	R	P	A	V	K	.	N	L	L	E	I	L	S	E	W	L	V	F	R	R	D	T	V	R	R	R	L	N	Y	R	L	E	K	V	L	K	R	L	H	I	L	E	G	L	L	V	A	F	L	N	.	I	D	E	V	I	E	I	I	R	N	E	D
Query Conservation									.															.																																													.
Alig confidence									.															.																																													.
Template Conservation
Template Sequence		L	I	S	P	I	S	L	M	N	M	V	A	F	D	P	H	G	K	I	K	K	Y	N	S	V	N	E	I	L	S	E	F	Y	Y	V	R	L	E	Y	Y	Q	K	R	K	D	H	M	S	E	R	L	Q	W	E	V	E	K	Y	S	F	Q	V	K	F	I	K	M	I	I	E	K	E	L	T	V	T	N	K	P	R
Template Known Secondary structure									T	T						T	T	S						S	S																																														T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		966	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.																	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	K	P	A	L	M	S	R	F	G	L	T	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	E	A	I	L	E	L	K	L	R	H	L	A	K	L	E	E	M	K	I	R	G	E	Q	S	E	L	E	K	E	R	D	Q	L	Q	G	I	L	A	S	E	R	K	M	N	N	L	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.								.	.	.
Template Conservation																																																																						.	.								.	.	.
Template Sequence		N	A	I	I	Q	E	L	E	N	L	G	F	P	R	F	N	K	E	G	K	P	Y	Y	G	S	P	E	E	L	Y	G	T	Y	E	Y	L	L	G	M	R	I	W	S	L	T	K	E	R	Y	Q	K	L	L	K	Q	K	Q	E	K	E	T	E	L	E	N	L	L	K	.	.	L	S	A	K	D	I	W	.	.	.
Template Known Secondary structure											T	T						T	T						S				T	T	T		B	S					T	S		G	G	G	G	S																							T	.	.	S							.	.	.
Template Predicted Secondary structure																																																																						.	.								.	.	.
Template SS confidence
		1046	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.			.	.	.	.	.	.	1120
		462	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	E	L	Q	A	D	A	Q	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	D	L	K	A	F	E	V	G	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1156	.	.	.	1160	.	.	.	.	.	.