Return to main results Retrieve Phyre Job Id

Job DescriptionP0AB38
Confidence87.84%DateThu Jan 5 11:14:32 GMT 2012
Rank3Aligned Residues100
% Identity19%Templatec2w8bB_
PDB info PDB header:protein transport/membrane proteinChain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal
Resolution1.86 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   103......110.........120.........130.........140.........150.........160.........170.........180..
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSAS
Query Conservation 
 
  
 
 
   
 

 

  
   
  



 

          

           

    
  


 
 
 


 
Alig confidence 













.

























..........




























Template Conservation 
    
   
    .          

  

          ..........              
   
          
Template Sequence  IGVVPFQWAGPGAA. PEDIGGIVAADLRNSGKFNPLDRARL. . . . . . . . . . PQQPGSAQEVQPAAWSALGIDAVVVGQVT
Template Known Secondary structure 


SSSS

.SS
TSS

GGG
..........S


SSSTT

TTT

Template Predicted Secondary structure 









.




..........



















Template SS confidence 















































































   37..40.........50 .........60.........70...... ...80.........90.........100.....
 
   183... ...190.........200. ........210...
Predicted Secondary structure 



.



..







Query SS confidence 



.














. .











Query Sequence  GNVN. APTLQMQLMLVQTGE. . IIWSGKGAVSQQ
Query Conservation      .   
   


  

 .. 

         
Alig confidence 



.














..











Template Conservation      
                  
          
Template Sequence  PNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ
Template Known Secondary structure 
TTS

SSSTT

GG
Template Predicted Secondary structure 










Template SS confidence 

































   106...110.........120.........130.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions