Return to main results Retrieve Phyre Job Id

Job DescriptionP0AB38
Confidence9.29%DateThu Jan 5 11:14:32 GMT 2012
Rank10Aligned Residues101
% Identity18%Templatec2ivzD_
PDB info PDB header:protein transport/hydrolaseChain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.........160.........170.......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  TAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVL
Query Conservation      

 
  
 
 
   
 

 

  
   
  



 

          

           

    
  


 
 
Alig confidence 

















.....






















..........























Template Conservation     

    
        .....
  

  

   
          ..........              
         
Template Sequence  SGRPIGVVPFQWAGAPED. . . . . IGGIVAADLRNSGKFNPLDRARL. . . . . . . . . . PQQPGSAQEVQPAAWSALGIDAVV
Template Known Secondary structure 








S
.....TSS

GGG
..........S


SSGGG

TTT

Template Predicted Secondary structure 











.....











..........















Template SS confidence 















































































   34.....40.........50. ........60.........70.... .....80.........90........
 
   178.180...... ...190.........200. ........210...
Predicted Secondary structure 



.



..







Query SS confidence 








.














. .











Query Sequence  YSSASGNVN. APTLQMQLMLVQTGE. . IIWSGKGAVSQQ
Query Conservation   


     .   
   


  

 .. 

         
Alig confidence 








.














..











Template Conservation           
                  
          
Template Sequence  VGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ
Template Known Secondary structure 
TTS

SSSTT

GG
Template Predicted Secondary structure 












Template SS confidence 






































   102.......110.........120.........130.........140
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions