 |
Job Description | P76464 | Confidence | 93.57% | Date | Wed Jan 25 15:21:08 GMT 2012 |
Rank | 55 | Aligned Residues | 96 |
% Identity | 5% | Template | d3dssb1 |
SCOP info | alpha/alpha toroid
| Terpenoid cyclases/Protein prenyltransferases
| Protein prenyltransferases
|
Resolution | 1.80 |
|
 |
  |   |
1065 | . | . | . | . | 1070 | . | |
. | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . | . | . | . | 1130 | . | . | . | . | . | . | . | . | . | 1140 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | P | W | G | G | V | I | . |
N | T | G | S | R | L | I | P | L | S | L | A | W | R | S | L | A | D | H | Q | S | A | A | A | N | D | I | R | Q | M | I | Q | D | N | R | L | R | L | M | Q | L | A | G | P | G | A | R | F | T | W | W | G | E | D | G | N | G | D | A | F | L | T | A | W | A | W | Y | A | D | W | Q | A |
Query Conservation |   |
|
|
|
|
|   |
| . |
|
|   |
|   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|   |
|
|   |   |   |
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |
|   |   |
|   |
|
|
|   |
|   |   |   |   |
|   |   |
|
|   |   |
| . | . | . | . | . | . | . |   |   |   |
|   |   |   |
|
|
|   | . |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |
|
Template Sequence |   |
Y | E | Y | C | M | S | E | Y | L | R | M | S | G | V | Y | W | G | L | T | V | M | D | L | M | G | Q | L | H | R | M | N | K | E | E | I | L | V | F | I | . |
. |
. |
. |
. |
. |
. |
K | S | C | Q | H | E | C | G | G | V | S | . |
A | S | I | G | H | D | P | H | L | L | Y | T | L | S | A | V | Q | I | L | T | L | Y |
Template Known Secondary structure |   |
G | G | S | G | G | G | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G | S |
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  | T | B |
| T | T | S |
| B | B | . | S | S | T | T | S |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
37 | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 80 | . | . | . | . | . | . | |
. | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
  |   |
1144 | . | . | . | . | . | 1150 | . | . | . | . | . | . | . | . | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Q | A | I | G | V | T | Q | Q | P | E | Y | W | Q | H | M | L | D | S | Y | A | E | Q | A | D | N | M | P | L | L |
Query Conservation |   |
|
|   |   |
|   |   |
|
|   |   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |
|
|
|   |   |
|
|
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
D | S | I | H | V | I | N | V | D | K | V | V | A | Y | V | Q | S | L | Q | K | E | D | G | S | F |
Template Known Secondary structure |   |
. | . | . | . | . | T |
| G | G | G | S |
|  |  |  |  |  |  |  |  |  |  | T | B |
| T | T | S |
| B |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|