Job Description P76464 Confidence 28.59% Date Wed Jan 25 15:21:08 GMT 2012 Rank 181 Aligned Residues 172 % Identity 13% Template c3shsA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:hoc head outer capsid protein; PDBTitle: three n-terminal domains of the bacteriophage rb49 highly immunogenic2 outer capsid protein (hoc) Resolution 1.95 Å

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		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q	L	L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A	G	R	F	P	V	S	L	E	G	S	E	T	V	S	D	A	S	G	H	V	A	L	N	L
Query Conservation
Alig confidence																											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	V	S	I	Q	S	N	K	R	C	F	L	A	G	D	G	F	T	L	T	A	T	V	A	.	.	.	G	D	E	P	L	P	S	N	L	T	Y	T	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	D	Q	P	H	E	N	N	T	A	T	L	T	V	A	D
Template Known Secondary structure									S		S	S	B		T	T											.	.	.		S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T				S			S	S					S	S
Template Predicted Secondary structure																											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.																						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.						.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		P	A	A	D	K	P	S	R	Y	L	L	T	V	S	A	S	D	G	A	A	Y	R	V	T	T	T	K	E	.	.	.	.	.	I	L	I	E	R	G	L	A	H	Y	S	L	S	T	A	A	Q	Y	S	N	S	G	E	S	V	V	F	R	Y	A	A	L	E	S	S	K	Q	V	P	V	T	Y	E	W	L	R	L
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.																																	.
Template Conservation																																																																			.
Template Sequence		A	T	S	E	N	A	G	S	Y	K	V	T	V	Q	D	T	D	T	M	T	S	V	E	S	E	V	F	L	M	E	E	A	E	L	I	V	N	I	T	E	P	Q	H	F	Y	V	S	S	Q	T	D	V	E	L	H	A	T	V	K	F	S	G	G	K	T	.	P	A	D	N	Y	E	L	H	Y	S	W	S	K	G
Template Known Secondary structure				G	G	G											T	T	T													B								S	S		S						S	S												T	T	S			.	S	S	T	T										T
Template Predicted Secondary structure																																																																			.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	R	T	S	H	S	G	E	L	P	S	G	G	K	S	F	T	V	N	F	A	K	P	G	N	Y	N	L	T	L	R	D	K	D	G	L	I	L	A	G	L	S	H	A	V
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		E	D	V	I	D	T	T	Q	D	I	.	.	.	.	T	I	Q	E	F	T	A	D	K	N	G	V	Y	T	V	K	V	W	G	E	S	E	D	S	A	A	S	A	S	T	K	I
Template Known Secondary structure		T					S	S	S			.	.	.	.				S			G	G	G										S	S	S	G	G	G
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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