Job Description P76464 Confidence 25.62% Date Wed Jan 25 15:21:08 GMT 2012 Rank 190 Aligned Residues 74 % Identity 19% Template c3mu3A_ PDB info PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Resolution 2.40 Å

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		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.					430
Predicted Secondary structure																											.	.	.																																				.												.	.	.	.
Query SS confidence																											.	.	.																																				.												.	.	.	.
Query Sequence		R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	.	.	.	K	L	S	V	L	D	A	N	G	S	L	L	Q	T	V	N	V	T	L	D	A	R	N	G	G	Q	G	S	F	R	L	P	E	N	A	.	V	A	G	G	Y	E	L	R	L	A	Y	.	.	.	.	R
Query Conservation																											.	.	.																																				.												.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.							.	.	.																																				.												.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	K	V	D	L	I	.	.	.	.	.	.	.	.	.	.	.	.	I	N	G	K	T	V	L	S	Y	S	E	T	L	C	G	P	G	L	S	K	L	I	F	C	G	K	K	K	G	E	H	L	Y	Y	E	G	P	I	T	L	G	I	K	E	I	P	Q	R	D	Y	T	I	T	A	R	L	T	N	E	D	R
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.		T	T												S	T	T					T	T	T	T			T	T												S	S	S	S															T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.													.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	V	Y	S	S	S	F	R	V	A	N	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	V	A	C	A	D	F	T	V	K	N	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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