Job Description P76464 Confidence 98.42% Date Wed Jan 25 15:21:08 GMT 2012 Rank 18 Aligned Residues 188 % Identity 6% Template c3hrzC_ PDB info PDB header:immune system Chain: C: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b Resolution 2.20 Å

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		1324	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	P	A	G	A	W	A	K	H	K	L	T	G	G	G	E	D	W	R	W	V	G	Q	G	V	P	D	I	L	S	F	G	D	E	L	S	P	Q	N	V	Q	V	R	W	R	E	P	A	K	M	A	Q	Q	S	N	I	P	V	T	V	E	R	Q	L	Y	R	L	I	P	G	E	E	E	M	S	F	I	L	Q
Query Conservation
Alig confidence																																					.																							.	.	.	.	.	.	.
Template Conservation																																					.																							.	.	.	.	.	.	.
Template Sequence		D	L	N	L	D	I	T	I	E	L	P	D	R	E	V	P	I	R	Y	R	I	N	Y	E	N	A	L	L	A	R	T	V	E	T	K	.	L	N	Q	D	I	T	V	T	A	S	G	D	G	K	A	T	M	T	I	L	T	F	.	.	.	.	.	.	.	Y	N	A	Q	L	V	C	N	K	F	H	L	N	V	S
Template Known Secondary structure												T	T		S	S								G	G	G	T	T								S	.	S											S											.	.	.	.	.	.	.									S
Template Predicted Secondary structure																																					.																							.	.	.	.	.	.	.
Template SS confidence
		1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.		.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.								.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.
		1404	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	T	S	N	E	I	D	S	D	A	L	Y	L	D	E	I	T	L	T	S	E	Q	D	A	V	L	R	Y	G	Q	V	E	V	P	L	P	P	G	A	D	V	E	R	T	T	W	G	I	S	V	N	K	P	N	A	A	K	Q	Q	G	Q	L	L	E	K	A	R	N	E	M	G	E	L	A	Y	M	V	P	V
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		V	E	N	I	H	L	.	.	N	K	G	A	L	M	L	K	I	C	T	R	Y	L	G	E	V	D	S	T	M	T	I	I	D	I	S	M	L	T	G	F	L	P	D	A	E	D	L	T	R	L	S	K	G	V	D	R	Y	I	S	R	Y	E	V	D	N	N	M	A	Q	K	V	A	V	I	I	Y	L	N	K	V
Template Known Secondary structure								.	.															S	S	S													T	T				B										S	T	T										T	T			S		S
Template Predicted Secondary structure								.	.
Template SS confidence
		1327	.	.	1330	.	.			.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.
		1484	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	T	G	T	V	T	F	R	H	L	L	R	F	S	Q	K	G	Q	F	V	L	P	P	A	R	Y	V	R	S	Y	A	P	A	Q	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	H	S	E	D	E	C	L	H	F	K	I	L	K	H	F	E	V	G	F	I	Q	P	G	S	V	K	V	Y	S	Y	Y	N	L	D	E	K	C
Template Known Secondary structure			S	S	S												S			S	S											T	T	B	T	T
Template Predicted Secondary structure
Template SS confidence
		1409	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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