Job Description P76464 Confidence 100.00% Date Wed Jan 25 15:21:08 GMT 2012 Rank 6 Aligned Residues 635 % Identity 13% Template c3g6jB_ PDB info PDB header:immune system Chain: B: PDB Molecule:complement c3 alpha chain; PDBTitle: c3b in complex with a c3b specific fab Resolution 3.10 Å

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		864	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.					.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.		.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																																			.
Query SS confidence																					.	.	.	.																																			.
Query Sequence		P	R	R	E	E	V	D	T	A	A	W	M	P	S	L	T	T	D	K	.	.	.	.	Q	G	K	A	Y	F	T	F	L	M	P	D	S	L	T	R	W	R	I	T	A	R	G	M	N	G	D	G	L	V	G	Q	G	R	.	A	Y	L	R	S	E	K	N	L	Y	M	K	W	S	M	P	T	V	Y	R	V	G
Query Conservation																					.	.	.	.																																			.
Alig confidence																					.	.	.	.																																			.
Template Conservation
Template Sequence		S	R	S	E	F	P	E	S	W	L	W	N	V	E	D	L	K	E	P	P	K	N	G	I	S	T	K	L	M	N	I	F	L	K	D	S	I	T	T	W	E	I	L	A	V	S	M	S	D	K	K	G	I	C	V	A	D	P	F	E	V	T	V	M	Q	D	F	F	I	D	L	R	L	P	Y	S	V	V	R	N
Template Known Secondary structure			B					S	S										S			B	T	T	B											S			S											T	T	T															S									S				T	T
Template Predicted Secondary structure
Template SS confidence
		741	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820
		939	940	.	.	.	.	.	.	.	.	.	950	.		.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.											.	.	970	.	.	.	.	.	.		.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.				.	1000	.	.	.
Predicted Secondary structure															.																	.	.	.	.	.	.	.	.	.	.										.																							.	.	.
Query SS confidence															.																	.	.	.	.	.	.	.	.	.	.										.																							.	.	.
Query Sequence		D	K	P	A	A	G	L	F	I	F	S	Q	Q	.	D	N	E	P	V	A	L	V	T	K	F	A	G	A	E	M	.	.	.	.	.	.	.	.	.	.	R	Q	T	L	T	L	H	K	G	.	A	N	Y	I	S	L	T	Q	N	I	Q	Q	S	G	L	L	S	A	E	L	Q	Q	.	.	.	N	G	Q	V	Q
Query Conservation															.																	.	.	.	.	.	.	.	.	.	.										.																							.	.	.
Alig confidence															.																	.	.	.	.	.	.	.	.	.	.										.																							.	.	.
Template Conservation
Template Sequence		E	Q	V	E	I	R	A	V	L	Y	N	Y	R	Q	N	Q	E	L	K	V	R	V	E	L	L	H	N	P	A	F	C	S	L	A	T	T	K	R	R	H	Q	Q	T	V	T	I	P	P	K	S	S	L	S	V	P	Y	V	I	V	P	L	K	T	G	L	Q	E	V	E	V	K	A	A	V	Y	H	H	F	I	S
Template Known Secondary structure															S	S													T	T			S	S		B	T	T	B										T	T													S													T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900
		1004	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.																	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.							.	1060	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Query Sequence		D	S	I	S	T	K	L	S	F	V	D	N	S	W	P	V	E	Q	Q	K	N	V	M	L	G	G	G	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	M	L	P	E	Q	A	S	N	I	R	L	Q	S	S	E	T	P	Q	E	I	F	R	N	N	.	.	.	.	.	.	L	D	A
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	V	R	K	S	L	K	V	V	P	E	G	I	R	M	N	K	T	V	A	V	R	T	L	D	P	E	R	L	G	R	E	G	V	Q	K	E	D	I	P	P	A	D	L	S	D	Q	V	P	D	T	E	S	E	T	R	I	L	L	Q	G	T	P	V	A	Q	M	T	E	D	A	V	D	A	E	R	L	K	H
Template Known Secondary structure													S	S							S							T	T	T	T	S		S	S													S			S	S															T	T	T							G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		901	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
		1062	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.							.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		L	V	D	E	P	W	G	G	V	I	N	T	G	S	R	L	I	P	L	S	L	A	W	R	S	L	A	D	H	Q	S	.	.	.	.	.	.	A	A	A	N	D	I	R	Q	M	I	Q	D	N	R	L	R	L	M	Q	L	A	G	P	G	A	R	F	T	W	W	G	E	D	G	N	G	D	A	F	L	T	A	W
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.																																		.
Template Conservation																																																																								.
Template Sequence		L	I	V	T	P	S	G	C	G	E	Q	N	M	I	G	M	T	P	T	V	I	A	V	H	Y	L	D	E	T	E	Q	W	E	K	F	G	L	E	K	R	Q	G	A	L	E	L	I	K	K	G	Y	T	Q	Q	L	A	F	R	Q	P	S	S	A	F	A	A	F	V	K	R	.	A	P	S	T	W	L	T	A	Y
Template Known Secondary structure		T						S	S	S	S																				T							S	T																	G	G	G			T	T	S				S	S	S	S	S	.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		981	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050		.	.	.	.	.	.	.	.	.
		1136	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170																										.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	Y	A	D	W	Q	A	S	Q	A	I	G	V	T	Q	Q	P	E	Y	W	Q	H	M	L	D	S	Y	A	E	Q	A	D	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	L	H	R	A	L	V	L	A	W	A	Q	E	M	N	L	P	C	K
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		V	V	K	V	F	S	L	A	V	N	L	.	.	I	A	I	D	S	Q	V	L	C	G	A	V	K	W	L	I	L	E	K	Q	K	P	D	G	V	F	Q	E	D	A	P	V	I	H	Q	E	M	I	G	G	L	R	N	N	N	E	K	D	M	A	L	T	A	F	V	L	I	S	L	Q	E	A	K	D	I	C	E
Template Known Secondary structure									T	T	T	T	.	.	S																		S			S	S						S	S			S	S	G	G	G	G	G	G	G	G	S		T	T	T	T	T													S	T	T	T		S
Template Predicted Secondary structure													.	.
Template SS confidence
		1060	.	.	.	.	.	.	.	.	.	1070			.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.
						1191	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	T	L	L	K	G	L	D	E	A	I	A	R	R	G	T	K	T	E	D	F	S	E	E	D	T	R	D	I	N	D	S	L	I	L	D	T	P	E	S	P	L	A	D	A	V	A	N	V	L	T	M	T	L	L	K	K	A	Q	L	K	S	T	V	M	P	Q	V	Q	Q	Y	A	W	D	K	A	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	V	N	S	L	P	G	S	I	T	K	A	G	D	F	L	E	A	N	Y	M	N	L	Q	R	S	Y	T	V	A	I	A	G	Y	A	L	A	Q	M	G	R	L	K	G	P	L	L	N	K	F	L	T	.	.	.	.	.	.	.	.	.	.	.	.	T	A	K	D	K	N	R	W	E	D	P	G	K	Q	L
Template Known Secondary structure		S	S	S	T	T															G	G	G	S			S													T	T	T				T									.	.	.	.	.	.	.	.	.	.	.	.	T	S	B	T	T	T	B				S	S		T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1138	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190													.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.
		1267	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.								.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		N	S	N	Q	P	L	A	H	T	V	V	L	L	N	S	G	G	D	A	T	Q	T	A	A	I	L	S	G	L	.	.	.	.	.	.	.	T	A	E	Q	S	T	I	E	R	A	L	A	M	N	W	L	A	K	Y	M	A	T	M	P	P	V	V	L	P	A	P	A	G	A	W	A	K	H	K	L	T	G	G	G
Query Conservation																															.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.																												.
Template Conservation																																																																	.
Template Sequence		Y	N	V	E	A	T	S	Y	A	L	L	A	L	L	Q	L	K	D	F	D	F	V	P	P	V	V	R	W	L	N	E	Q	R	Y	Y	G	G	G	Y	G	S	T	Q	A	T	F	M	V	F	Q	A	L	A	Q	Y	Q	K	D	A	P	D	H	Q	.	E	L	N	L	D	V	S	L	Q	L	P	S	R	S	S	K
Template Known Secondary structure																		T		T	T	S										T	T						S	S	S																			S		S	S		.											S	S	S	S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		1206	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.		.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.
		1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.		1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		E	D	W	R	W	V	G	Q	G	V	P	D	I	L	S	F	G	D	E	L	S	P	Q	N	V	Q	V	R	W	R	E	P	A	K	M	A	Q	Q	S	N	I	P	V	T	V	E	R	Q	L	Y	R	L	I	P	G	E	E	E	M	S	.	F	I	L	Q	P	V	T	S	N	E	I	D	S	D	A	L	Y	L	D
Query Conservation																																																														.
Alig confidence																						.															.	.	.	.	.	.																				.
Template Conservation																						.															.	.	.	.	.	.
Template Sequence		I	T	H	R	I	H	W	E	S	A	S	L	L	R	S	E	E	T	K	E	.	N	E	G	F	T	V	T	A	E	G	K	G	Q	G	.	.	.	.	.	.	T	L	S	V	V	T	M	Y	H	A	K	A	K	D	Q	L	T	C	N	K	F	D	L	K	V	T	I	K	P	A	P	E	T	K	N	T	M	I	L
Template Known Secondary structure								T	T	S	S									S	S	.										S	S				.	.	.	.	.	.														S			S		S	S
Template Predicted Secondary structure																						.															.	.	.	.	.	.
Template SS confidence
		1285	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.		.	.	.	.	.	1310	.	.	.	.	.	.	.	.							.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.
		1419	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	T	L	T	S	E	Q	D	A	V	L	R	Y	G	Q	V	E	V	P	L	P	P	G	A	D	V	E	R	T	T	W	G	I	S	V	N	K	P	N	A	A	K	Q	Q	G	Q	L	L	E	K	A	R	N	E	M	G	E	L	A	Y	M	V	P	V	K	E	L	T	G	T	V	T	F	R	H	L	L	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	C	T	R	Y	R	G	D	Q	D	A	T	M	S	I	L	D	I	S	M	M	T	G	F	A	P	D	T	D	D	L	K	Q	L	A	N	G	V	D	R	Y	I	S	K	Y	E	L	D	K	A	F	S	D	R	N	T	L	I	I	Y	L	D	K	V	S	H	S	E	D	D	C	L	A	F	K	V	H	Q	Y
Template Known Secondary structure								S	S	S	S													T	T														S	T	T									T	S		S	S	S													S	S	S
Template Predicted Secondary structure
Template SS confidence
		1365	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.
		1499	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	K	G	Q	F	V	L	P	P	A	R	Y	V	R	S	Y	A	P	A	Q	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	N	V	E	L	I	Q	P	G	A	V	K	V	Y	A	Y	Y	N	L	E	E	S	C
Template Known Secondary structure		S			S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		1445	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.