Job Description P76464 Confidence 22.06% Date Wed Jan 25 15:21:08 GMT 2012 Rank 199 Aligned Residues 168 % Identity 20% Template c2r51A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 26b; PDBTitle: crystal structure of mouse vps26b Resolution 2.10 Å

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		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.									390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.																											.							.
Query SS confidence																																								.	.	.	.	.	.	.	.																											.							.
Query Sequence		P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	D	.	.	.	.	.	.	.	.	A	N	G	S	L	L	Q	T	V	N	V	T	L	D	A	R	N	G	G	Q	G	S	F	R	L	P	.	E	N	A	V	A	G	.
Query Conservation																																								.	.	.	.	.	.	.	.																											.							.
Alig confidence																			.	.	.																			.	.	.	.	.	.	.	.																											.							.
Template Conservation																			.	.	.
Template Sequence		F	L	F	Y	D	G	E	T	V	S	G	K	V	S	L	S	L	.	.	.	K	N	P	N	K	R	L	E	H	Q	G	I	K	I	E	F	I	G	Q	I	E	L	Y	Y	D	R	G	N	H	H	E	F	V	S	L	V	K	D	L	A	R	P	G	E	I	T	Q	S	Q	A	F	D	F	E	F	T	H	V	E	K
Template Known Secondary structure						T	B												.	.	.	S	S	T	T	S					S													G	G	G	T	T															S					S										S	B
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
														422	.	.	.	.	.	.	.	430	.	.					.	.	.	.	.	.	.	440	.	.	.	.	.																.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	Y	E	L	R	L	A	Y	R	N	Q	.	.	.	.	V	Y	S	S	S	F	R	V	A	N	Y	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	E	S	Y	T	G	Q	N	V	K	L	R	Y	F	L	R	A	T	I	S	R	R	L	N	D	V	V	K	E	X	D	I	V	V	H	T	L	S	T	Y	P	E	L	N	S	S	I	K	X	E	V	G	I	E	D	C	L	H	I	E	F	E	Y	N	K	S	K	Y	H	L	K	D	V	I	V	G	K	I	Y
Template Known Secondary structure			S						S	S														S	S																															T	T	T								S		S				T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		471	.	.																																					.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A	G	R	F	P	V	S	L	E	G	S	E
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	L	V	R	I	K	I	K	H	X	E	I	D	I	I	K	R	E	T	T	G	T	G	P	N	V	Y	H	E	N	D	T	I	A	K	Y	E	I	X	D	G	A	P	V	R	G	E	S	I	P	I	R	L	F	L	A	G	Y	E	L	T	P	T	X	R	D	I	N	K	K	F	S	V	R	Y	Y	L	N	L
Template Known Secondary structure							S																		T	T																	S				T	T									G	G	G	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		515	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	S	D	A	S	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	I	D	E	E	E	R
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions