Job Description P76464 Confidence 100.00% Date Wed Jan 25 15:21:08 GMT 2012 Rank 8 Aligned Residues 535 % Identity 15% Template c2qkiA_ PDB info PDB header:immune system/hydrolase inhibitor Chain: A: PDB Molecule:complement c3; PDBTitle: human c3c in complex with the inhibitor compstatin Resolution 2.40 Å

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		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.
Query Sequence		V	S	G	K	E	L	L	V	W	T	A	G	K	K	Q	G	E	A	K	P	G	S	E	I	L	W	T	D	.	.	.	.	.	.	.	.	.	G	L	G	V	M	T	R	G	V	T	D	D	S	G	T	L	Q	L	Q	H	I	S	P	E	R	S	Y	I	L	G	K	D	A	E	G	G	V	F	V	S	E	N	F
Query Conservation																														.	.	.	.	.	.	.	.	.
Alig confidence																						.								.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		R	L	E	S	E	E	T	M	V	L	E	A	H	D	A	Q	G	D	V	P	.	V	T	V	T	V	H	D	F	P	G	K	K	L	V	L	S	S	E	K	T	V	L	T	P	A	T	N	H	M	G	N	V	T	F	T	I	P	A	N	R	G	R	N	K	F	V	T	V	Q	A	T	F	G	T	Q	V	V	E	K
Template Known Secondary structure			B	T	S										S			S				.								S	S	S				B	S									T	T	T	T	S								B																	T	T
Template Predicted Secondary structure																						.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		F	Y	E	S	E	I	Y	N	T	R	L	Y	I	F	T	D	R	P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	D	A	N	G	S	L	L	Q	T	V	N	V	T	L	.	D	A	R	N	G	G	Q	G	S	F	R
Query Conservation																																																																						.
Alig confidence																																								.	.	.	.	.																										.
Template Conservation																																								.	.	.	.	.
Template Sequence		V	V	L	V	S	L	Q	S	G	Y	L	F	I	Q	T	D	K	T	I	Y	T	P	G	S	T	V	L	Y	R	I	F	T	V	N	H	K	L	L	.	.	.	.	.	P	V	G	R	T	V	M	V	N	I	E	N	P	E	G	I	P	V	K	Q	D	S	L	S	S	Q	N	Q	L	G	V	L	P	L	S	W	D
Template Known Secondary structure																	S		S				T	T												T	T	S		.	.	.	.	.	B												T	T												T	T	T	T	T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.			.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																															.	.
Query SS confidence																				.	.	.																															.	.
Query Sequence		L	P	E	N	A	V	A	G	G	Y	E	L	R	L	A	Y	R	N	.	.	.	Q	V	Y	S	S	S	F	R	V	A	N	Y	I	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	.	.	G	E	A	V	S	G	K	L	Q	L	L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L
Query Conservation																				.	.	.																															.	.
Alig confidence																				.	.	.																															.	.																					.
Template Conservation																																																																											.
Template Sequence		I	P	E	L	V	N	M	G	Q	W	K	I	R	A	Y	Y	E	N	S	P	Q	Q	V	F	S	T	E	F	E	V	K	E	Y	V	L	P	S	F	E	V	I	V	E	P	T	E	K	F	Y	Y	I	Y	N	E	K	G	L	E	V	T	I	T	A	R	F	L	Y	G	K	K	V	E	G	.	T	A	F	V	I	F
Template Known Secondary structure				S	S													T	T		T	T	S															S								S	S	S	S			T	T		T	T											T	T	S		B				.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.														530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A	G	R	F	P	V	S	L	E	G	S	E	T	V	S	D	A	S	G	H	V	A	L	N	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	K	P	S	R	Y	L	L	T	V	S	A	S	D	G	A	A	Y	R	V	T	T	T	K	E
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	Q	D	.	.	.	.	.	.	.	.	.	.	G	E	Q	R	I	S	L	P	E	S	L	K	R	I	P	I	E	D	G	S	G	E	V	V	L	S	R	K	V	L	L	D	G	V	Q	R	A	E	D	L	V	G	K	S	L	Y	V	S	A	T	V	I	L	H	S	G	S	D	M	V	Q	A	E	R	S	G
Template Known Secondary structure					S	.	.	.	.	.	.	.	.	.	.	S	S						G	G	G							B	T	T														T	T				G	G	G	T	T												T	T	S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.											.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.		.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.		.	.	.	630	.	.	.
Predicted Secondary structure																																																				.																						.
Query SS confidence																																																				.																						.
Query Sequence		I	L	I	E	R	G	L	A	H	Y	S	L	S	T	A	A	Q	Y	S	N	S	G	E	S	V	V	F	R	Y	A	A	L	E	S	S	K	Q	V	P	V	T	Y	E	W	L	R	L	E	D	R	.	T	S	H	S	G	E	L	P	S	G	G	K	S	F	T	V	N	F	A	K	P	.	G	N	Y	N	L	T	L
Query Conservation																																																				.																						.
Alig confidence																																		.																		.																						.
Template Conservation																																		.
Template Sequence		I	P	I	V	T	S	P	Y	Q	I	H	F	T	K	T	P	K	Y	F	K	P	G	M	P	F	D	L	M	V	F	V	T	.	N	P	D	G	S	P	A	Y	R	V	P	V	A	V	Q	G	E	D	T	V	Q	S	L	T	Q	G	D	G	V	A	K	L	S	I	N	T	H	P	S	Q	K	P	L	S	I	T	V
Template Known Secondary structure						S		S						T	T	S		S				T	T	S										.		T	T	S		B			S						S	S	S	G	G	G						T	T	S										S			S
Template Predicted Secondary structure																																		.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		634	.	.	.	.	.	640						.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.								.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure									.	.	.	.	.																																																.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																																																.	.	.	.	.	.	.
Query Sequence		R	D	K	D	G	L	I	.	.	.	.	.	L	A	G	L	S	H	A	V	S	G	K	G	S	T	A	H	T	G	T	V	D	I	V	A	D	K	T	L	Y	Q	P	G	E	T	A	K	M	L	I	T	F	P	E	P	I	D	E	.	.	.	.	.	.	.	A	L	L	T	L	E	R	D	R	V	E	Q	Q	S
Query Conservation									.	.	.	.	.																																																.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	K	K	Q	E	L	S	E	A	E	Q	A	T	R	T	M	Q	A	L	P	Y	S	T	V	G	N	S	N	N	Y	L	H	L	S	V	L	R	T	E	L	R	P	G	E	T	L	N	V	N	F	L	L	R	M	D	R	A	H	E	A	K	I	R	Y	Y	T	Y	L	I	M	N	K	G	R	L	L	K	A	G
Template Known Secondary structure						T	T	S		T	T	T	S													T	T	S												S				T	T													T	T	T	G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.						.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.		.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.																	.
Query SS confidence																																											.	.	.	.	.																	.
Query Sequence		L	L	S	H	P	A	N	W	L	T	L	Q	R	L	N	D	T	Q	Y	E	A	R	V	P	V	S	N	S	F	A	P	N	I	T	F	S	V	L	Y	T	R	.	.	.	.	.	N	G	Q	Y	S	F	Q	N	A	G	I	K	V	A	V	P	.	Q	L	D	I	R	V	K	T	D	K	T	H	Y	Q	P	G	E
Query Conservation																																											.	.	.	.	.																	.
Alig confidence							.	.	.	.	.	.	.	.																													.	.	.	.	.																	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence		R	Q	V	R	E	.	.	.	.	.	.	.	.	P	G	Q	D	L	V	V	L	P	L	S	I	T	T	D	F	I	P	S	F	R	L	V	A	Y	Y	T	L	I	G	A	S	G	Q	R	E	V	V	A	D	S	V	W	V	D	V	K	D	S	C	V	G	S	L	V	V	K	S	G	Q	S	Q	P	V	P	G	Q
Template Known Secondary structure							.	.	.	.	.	.	.	.	T	T		S										G	G	G		S													S	S	S																		S	S							S						T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
		483	.	.	.	.									.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		776	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	N	V	E	L	T	S	S	L	K	G	K	P	V	S	A	Q	L	T	V	G	V	V	D	E	M	I	Y	A	L	Q	P	E	I	A	P	N	I	G	K	F	F	Y	P	L	G	R	N	N	V	R	T	S
Query Conservation
Alig confidence													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		Q	M	T	L	K	I	E	G	D	H	G	.	.	.	.	.	A	R	V	V	L	V	A	V	D	K	G	V	F	V	L	N	K	K	N	K	L	T	Q	S	K	I	W	D	V	V	E	K	A	D	I	G	C	T
Template Known Secondary structure											T	T	.	.	.	.	.										T								T	T														T		S			S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		558	.	560	.	.	.	.	.	.	.	.						.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.