Job Description P76464 Confidence 96.17% Date Wed Jan 25 15:21:08 GMT 2012 Rank 30 Aligned Residues 170 % Identity 14% Template c2pz4A_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:protein gbs052; PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae Resolution 1.80 Å

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		277	.	.	280	.	.	.	.	.	.	.	.	.	290																								.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	G	E	A	K	P	G	S	E	I	L	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	L	G	V	M	T	R	G	V	T	D	D	S	G	T	L	Q	L	Q	H	I	S	P	E	R	S	Y	I	L	G	K	D	A	E	G	G	V	F	V	S	E	N
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	G	T	P	I	E	G	V	L	Y	Q	L	Y	Q	L	K	S	T	E	D	G	D	L	L	A	H	W	N	S	L	T	I	T	E	L	K	K	Q	A	Q	Q	V	F	E	A	T	T	N	Q	Q	G	K	A	T	F	N	Q	L	P	D	G	I	Y	Y	G	L	A	V	K	A	G	E	K	N	R	N	V	S	A
Template Known Secondary structure		S	S					S	S									S					T	T							T	S																			T	T	S									S										T	T				T	T	B
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.														400
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	F	Y	E	S	E	I	Y	N	T	R	L	Y	I	F	T	D	R	P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	D	A	N	G	S	L	L	Q	T	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.																							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.																							.	.	.
Template Sequence		F	L	V	D	L	S	E	D	K	V	I	Y	P	K	I	I	W	S	.	.	.	.	.	.	.	T	G	E	L	D	L	L	K	V	G	V	D	G	D	T	K	K	P	L	A	G	V	.	.	.	V	F	E	L	Y	E	K	N	G	R	T	P	I	R	V	K	N	G	V	H	S	Q	D	I	D	A	A	K	H	L
Template Known Secondary structure							S	S								B				.	.	.	.	.	.	.													T	T							S		.	.	.							T	T		S	S		B				T	T					S	T	T		B	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.																							.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.						.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		T	L	D	A	R	N	G	G	Q	G	S	F	R	L	P	E	N	A	V	A	G	G	Y	E	L	R	L	A	Y	R	N	Q	V	Y	.	.	.	.	.	S	S	S	F	R	V	A	N	Y	I	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T
Query Conservation																																				.	.	.	.	.
Alig confidence													.	.	.	.	.																			.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		E	T	D	S	S	G	H	I	R	I	S	.	.	.	.	.	G	L	I	H	G	D	Y	V	L	K	E	I	E	T	Q	S	G	Y	Q	I	G	Q	A	E	T	A	V	T	I	E	K	S	K	T	V	T	V	T	I	E	N	K	K	V	P	T	P	K	V	P
Template Known Secondary structure					T	T	S						.	.	.	.	.				S												T	T	B					S								T	T	S										B
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions