Job Description P76464 Confidence 92.19% Date Wed Jan 25 15:21:08 GMT 2012 Rank 70 Aligned Residues 197 % Identity 19% Template c2fauA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting 26; PDBTitle: crystal structure of human vps26 Resolution 2.10 Å

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		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.									.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.							.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	.	.	.	.	.	.	.	.	D	A	N	G	S	L	L	Q	T	V	N	V	T	L	D	A	R	N	G	.	.	.	.	.	.	G	Q	G	S	F	R	L	P	E	N
Query Conservation																																							.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																.	.	.																					.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		Y	L	F	Y	D	G	E	S	V	S	G	K	V	N	.	.	.	L	A	F	K	Q	P	G	K	R	L	E	H	Q	G	I	R	I	E	F	V	G	Q	I	E	L	F	N	D	K	S	N	T	H	E	F	V	N	L	V	K	E	L	A	L	P	G	E	L	T	Q	S	R	S	Y	D	F	E	F	M	Q	V	E	K
Template Known Secondary structure						T	T									.	.	.				S	S	S	S						S														S	T	T																S					S										S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		418	.	420	.									.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.																			.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure						.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	A	G	.	.	.	.	.	.	.	.	G	Y	E	L	R	L	A	Y	R	N	Q	V	Y	S	S	S	F	R	V	A	N	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q	L
Query Conservation						.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	E	S	Y	I	G	A	N	V	R	L	R	Y	F	L	K	V	T	I	V	R	R	L	T	D	L	V	K	E	Y	D	L	I	V	H	Q	L	A	T	Y	P	D	V	N	N	S	I	K	M	E	V	G	I	E	D	L	H	I	E	F	E	Y	N	K	S	K	Y	H	L	K	D	V	I	V	G	K	I	Y	F
Template Known Secondary structure			S						S	S														S	S	S														B																									S		S				T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.				.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.														.
Predicted Secondary structure																																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A	G	R	F	P	V	S	L	E	G	S	E	T	V	S	D	.	.	.	A	S	G	H	V	A	L	N	L	P	A	A	D	K	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation																																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.													.						.	.	.	.	.	.	.	.	.	.																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.													.						.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	.	V	R	I	K	I	Q	H	M	E	L	Q	L	.	I	K	K	E	I	.	.	.	.	.	.	.	.	.	.	T	G	I	G	P	S	T	T	T	E	T	E	T	I	A	K	Y	E	I	M	D	G	S	I	P	I	R	L	F	L	A	G	Y	D	P	T	P	T	M	R	D	V	N	K	K	F	S	V	R
Template Known Secondary structure				.			S										.						.	.	.	.	.	.	.	.	.	.		S		G	G	G																								S	T	T	T											T	T
Template Predicted Secondary structure				.													.						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.		200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.											.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	L	T	V	S	A	S	D	G	A	A	Y	R	V	T	T	T	K	E	I	L	I	E	R	G	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	L	N	L	V	L	V	D	E	E	D	R	R	Y	F	K	Q	Q	E	I	I	L	W	R	K	A	P
Template Known Secondary structure											T	T															B
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions