Phyre 2 alignment of P76464 with c1z7zI

Job Description P76464
Confidence 48.05% Date Wed Jan 25 15:21:08 GMT 2012

Rank 151 Aligned Residues 298

% Identity 12% Template c1z7zI_

PDB info PDB header:virus/receptor Chain: I: PDB Molecule:intercellular adhesion molecule-1; PDBTitle: cryo-em structure of human coxsackievirus a21 complexed with five2 domain icam-1kilifi

Resolution 8.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	L	Y	I	F	T	D	R	P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	D	A	N	G	S	L	L	Q	T	V	N	V	T	L	D	A	R	N	G	G	Q	G	S	F	R	L	P	E	N	A	V	A	G	G	Y
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																							.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																							.	.
Template Sequence	Q	T	S	V	S	P	S	K	V	I	L	P	R	G	G	S	V	L	V	T	C	S	.	.	.	.	.	.	.	.	.	.	.	T	S	C	D	Q	P	M	L	L	G	I	E	T	P	L	P	.	.	.	.	K	K	E	L	L	L	P	G	N	N	R	K	V	Y	E	L	S	N	V	Q	E	D	.	.	S	Q	P
Template Known Secondary structure						S	S						T	T									.	.	.	.	.	.	.	.	.	.	.			S	S									S	S	S		.	.	.	.						S	S	T	T	T											S		.	.	B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																							.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.

	424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	L	R	L	A	Y	R	N	Q	V	Y	S	S	S	F	R	V	A	N	Y	I	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q	L	L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A
Query Conservation
Alig confidence																										.																								.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.																								.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	C	Y	S	N	C	P	D	G	Q	S	T	A	K	T	F	L	T	V	Y	W	T	P	E	R	.	V	E	L	A	P	L	P	S	W	Q	P	V	G	K	N	L	T	L	R	C	Q	V	E	.	.	G	G	A	P	R	A	N	L	T	V	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure							T	T													B			S		.								S				T	T	S										.	.			B		G	G	G						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.																								.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.																	.

	504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence	G	R	F	P	V	S	L	E	G	S	E	T	V	S	D	A	S	G	H	V	A	L	N	L	P	A	A	D	K	P	S	R	Y	L	L	T	V	S	A	S	D	G	A	A	Y	.	.	.	.	.	R	V	T	T	T	K	E	I	L	I	E	R	G	L	A	H	Y	S	L	S	T	A	A	Q	Y	S	N	S	G	E
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence	R	G	E	K	E	L	K	R	E	P	A	V	G	E	P	A	E	V	T	T	T	V	L	V	R	R	D	H	H	G	A	N	F	S	C	R	T	E	L	D	L	R	P	Q	G	L	E	L	F	E	N	T	S	A	P	Y	Q	L	Q	T	F	V	L	P	A	T	P	P	Q	L	V	S	P	R	V	L	E	V	D	T
Template Known Secondary structure		T	T										T	T	T											S	S		S	S												G	G	G	T	S																			S	S								S				T	T	S
Template Predicted Secondary structure
Template SS confidence
	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.					.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence	S	V	V	F	R	Y	A	A	L	E	S	S	K	Q	V	P	V	T	Y	E	W	L	R	L	E	D	R	T	S	H	S	G	E	L	P	S	G	G	K	.	.	.	.	S	F	T	V	N	F	A	K	P	G	N	Y	N	L	T	L	R	D	K	D	G	L	I	L	A	G	L	S	H	A	V	S	G	K	G	S	T
Query Conservation																																								.	.	.	.
Alig confidence																																								.	.	.	.																																			.	.	.
Template Conservation																																																																														.	.	.
Template Sequence	Q	G	T	V	V	C	S	L	D	G	L	F	P	V	S	E	A	Q	V	H	L	A	L	G	D	Q	R	L	N	P	T	V	T	Y	G	N	D	S	F	S	A	K	A	S	V	S	V	T	A	E	D	E	G	T	Q	R	L	T	C	A	V	I	L	G	N	Q	S	Q	E	T	L	Q	T	V	T	I	Y	.	.	.
Template Known Secondary structure										S		T	T	G	G	G								T	T											T	T												G	G	G													T	T													.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

	655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	H	T	G	T	V	D	I	V	A	D	K	T	L	Y	Q	P	G	E	T	A	K	M	L	I	T	F
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	S	F	P	A	P	N	V	I	L	T	K	P	E	V	S	E	G	T	E	V	T	V	K	C	E	A
Template Known Secondary structure	.										S		S				T	T
Template Predicted Secondary structure	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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