Job Description P76464 Confidence 23.64% Date Wed Jan 25 15:21:08 GMT 2012 Rank 195 Aligned Residues 235 % Identity 14% Template c1p53A_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:intercellular adhesion molecule-1; PDBTitle: the crystal structure of icam-1 d3-d5 fragment Resolution 3.06 Å

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		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	D	R	P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	D	A	N	G	S	L	L	Q	T	V	N	V	T	L	D	A	R	N	G	G	Q	G	S	F	R	L	P	E	N	A	V	A	G	G	Y	E	L	R	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence		L	V	S	P	R	V	L	E	V	D	T	Q	G	T	V	V	C	S	L	D	G	.	.	.	.	.	.	.	.	L	F	P	V	S	E	A	Q	V	H	L	A	L	G	D	Q	R	L	N	P	T	V	T	Y	G	N	D	S	F	S	A	K	A	S	V	S	V	T	A	E	D	E	G	T	Q	R	L	T	C	A	V
Template Known Secondary structure						S				T	T	S										S	.	.	.	.	.	.	.	.		B	T	G	G	G								T	T											T	T												G	G	G
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	R	N	Q	V	Y	S	S	S	F	R	V	A	N	Y	I	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q	L	L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A	G	R	F	P
Query Conservation
Alig confidence																								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	N	Q	S	Q	E	T	L	Q	T	V	T	I	Y	S	F	P	A	P	N	.	.	V	I	L	T	K	P	E	V	S	E	G	T	E	V	T	V	K	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T																			.	.				S		S				T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.				.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		V	S	L	E	G	S	E	T	V	S	D	A	S	G	H	V	A	L	N	L	P	A	A	D	K	P	S	R	Y	L	L	T	V	S	A	S	D	G	A	A	Y	R	V	T	T	T	K	E	I	L	I	E	R	G	L	A	H	Y	S	L	S	T	A	A	Q	Y	.	.	.	S	N	S	G	E	S	V	V	F	R	Y
Query Conservation																																																																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																														.																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	.	A	G	P	R	A	Q	L	L	L	K	A	T	P	E	D	N	G	R	S	F	S	C	S	A	T	L	E	V	A	.	G	Q	L	I	H	K	N	Q	T	R	E	L	R	V	L	Y	G	P	R	L	D	E	R	D	C	P	G	N	W	T	W	P	E	N	S	Q	Q	T	P	M	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.													G	G	G	T	T												T	.	T																					S	T	T	S		S						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																														.
Template SS confidence
											307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	E	S	S	K	Q	V	P	V	T	Y	E	W	L	R	L	E	D	R	T	S	H	S	G	E	L	P	S	G	G	K	S	F	T	V	N	F	A	K	P	G	N	Y	N	L	T	L	R	D	K	D	G	L	I	L	A	G	L	S	H	A	V
Query Conservation
Alig confidence								.	.	.							.	.	.	.	.	.
Template Conservation								.	.	.							.	.	.	.	.	.
Template Sequence		Q	A	W	G	N	P	.	.	.	L	P	E	L	K	C	.	.	.	.	.	.	L	K	D	G	T	F	P	L	P	I	G	E	S	V	T	V	T	R	D	L	E	G	T	Y	L	C	R	A	R	S	T	Q	G	E	V	T	R	E	V	T	V	N	V
Template Known Secondary structure							S	.	.	.							.	.	.	.	.	.			T	T	T					T	T	S						G	G	G											T	T
Template Predicted Secondary structure								.	.	.							.	.	.	.	.	.
Template SS confidence
		393	.	.	.	.	.				.	400	.	.	.	.							.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions