Job Description P76464 Confidence 98.51% Date Wed Jan 25 15:21:08 GMT 2012 Rank 17 Aligned Residues 197 % Identity 12% Template c1o79A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:squalene--hopene cyclase; PDBTitle: structures of human oxidosqualene cyclase inhibitors bound2 to a homolgous enzyme Resolution 2.8 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.																			.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	L	A	W	R	S	L	A	D	H	Q	S	A	A	A	N	D	I	R	Q	M	I	Q	D	N	R	L	R	L	M	Q	L	A	G	P	G	A	R	F	T	W	W	G	E	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	D	A	F	L	T	A	W	A	W	Y	A	D	W
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	V	V	V	W	A	L	N	T	L	R	L	P	D	E	R	R	R	R	D	A	M	T	K	G	F	R	W	I	V	G	M	Q	S	S	N	G	G	W	G	A	Y	D	V	D	N	T	S	D	L	P	N	H	I	P	F	C	D	F	G	E	V	T	D	P	P	S	E	D	V	T	A	H	V	L	E	C	F	G
Template Known Secondary structure											T				S																		T	T			T	T	S		B		S	S	S	S	S	B			S	S	G	G	G	S	S	S			S	S			S	B			B
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		1142	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.											.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	S	Q	A	I	G	V	T	Q	Q	P	E	Y	W	Q	H	M	L	D	S	Y	A	E	Q	A	D	N	M	P	.	.	.	.	.	.	.	.	.	.	L	L	H	R	A	L	V	L	A	W	A	Q	E	M	N	L	P	C	K	T	L	L	K	G	L	D	E	A	I	A	R	R	G	T	K	T	E	D	F	S
Query Conservation																																.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	.	.	.	.	G	Y	D	D	A	W	K	V	I	R	R	A	V	E	Y	L	K	R	E	Q	K	P	D	G	S	W	F	G	R	W	G	V	N	Y	L	Y	G	T	G	A	V	V	S	A	L	K	A	V	G	I	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.	.	.	.	T			T	T	S																T	T	S					S	S	B	S																T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		458	.					460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		1212	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		E	E	D	T	R	D	I	N	D	S	L	I	L	D	T	P	E	S	P	L	A	D	A	V	A	N	V	L	T	M	T	L	L	K	K	A	Q	L	K	S	T	V	M	P	Q	V	Q	Q	Y	A	W	D	K	A	A	N	S	N	Q	P	L	A	H	T	V	V	L	L	N	S	.	.	G	G	D	A	T	Q	T	A
Query Conservation																																																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	P	Y	I	Q	K	A	L	D	W	V	E	Q	H	Q	N	P	D	G	G	W	G	E	D	C	R	S	Y	E	D	P	A	Y	A	G	K	G	A	S	T	P	S	Q	T	A	W	A	L	M	A	L	I	A	G	G	R	A	E	S	E	A	A	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S												T	T	B		T	T	S	S	B	B			G	G	G	G	T		G	G	G	T	T		S		B															T	T	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
		1290	.	.	.	.	.	.	.	.	.																									1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	L	S	G	L	T	A	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	I	E	R	A	L	A	M	N	W	L	A	K	Y	M	A	T	M
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	V	Q	Y	L	V	E	T	Q	R	P	D	G	G	W	D	E	P	Y	Y	T	G	T	G	F	P	G	D	F	Y	L	G	Y	T	M	Y	R	H	V	F	P	T	L	A	L	G	R	Y	K	Q	A	I
Template Known Secondary structure													T	T	S						S							T	T	T						T	T																T
Template Predicted Secondary structure
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions