Job Description P76464 Confidence 100.00% Date Wed Jan 25 15:21:08 GMT 2012 Rank 10 Aligned Residues 251 % Identity 18% Template c1hzfA_ PDB info PDB header:immune system Chain: A: PDB Molecule:complement factor c4a; PDBTitle: c4adg fragment of human complement factor c4a Resolution 2.30 Å

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		1057	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.							.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		N	N	L	D	A	L	V	D	E	P	W	G	G	V	I	N	T	G	S	R	L	I	P	L	S	L	A	W	R	S	L	A	D	H	Q	S	A	A	.	.	.	.	.	.	A	N	D	I	R	Q	M	I	Q	D	N	R	L	R	L	M	Q	L	A	G	P	G	A	R	F	T	W	W	G	E	D	G	N	G	D	A
Query Conservation																																								.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																																.
Template Conservation																																																																													.
Template Sequence		G	G	V	A	S	L	L	R	L	P	R	G	C	G	E	Q	T	X	I	Y	L	A	P	T	L	A	A	S	R	Y	L	D	K	T	E	Q	W	S	T	L	P	P	E	T	K	D	H	A	V	D	L	I	Q	K	G	Y	M	R	I	Q	Q	F	R	K	A	D	G	S	Y	A	A	W	L	S	R	.	D	S	S	T
Template Known Secondary structure						T	T						S	S																					T	T		S	T	T	S		T	T																		T	T	B		T	T	S		B		S	S	T	T	S	.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		979	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.		.	.	.	.
		1131	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.																								.	.	.	.	.	.	1180	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	T	A	W	A	W	Y	A	D	W	Q	A	S	Q	A	I	G	V	T	Q	Q	P	E	Y	W	Q	H	M	L	D	S	Y	A	E	Q	A	D	N	M	P	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	A	L	V	L	A	W	A	Q	E	M	N	L
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.							.
Template Sequence		W	L	T	A	F	V	L	K	V	L	S	L	.	A	Q	E	Q	V	G	.	G	S	P	E	K	L	Q	E	T	S	N	W	L	L	S	Q	Q	Q	A	D	G	S	F	Q	D	P	C	P	V	L	D	R	S	X	Q	G	G	L	V	G	N	D	E	T	V	A	L	T	A	F	V	T	I	A	L	H	H	G	L	A
Template Known Secondary structure														.		G	G	G	T		.														G	G	G	B		T	T	S		B			S	S			S		G	G	G	G	G	G	G	S	S	T	T																		T
Template Predicted Secondary structure														.							.
Template SS confidence
		1058	.	1060	.	.	.	.	.	.	.	.	.		1070	.	.	.	.	.		.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.
		1188	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.											.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		P	C	K	T	L	L	K	G	L	D	E	A	I	A	R	R	G	T	K	T	E	.	.	.	.	.	.	.	.	.	.	D	F	S	E	E	D	T	R	D	I	N	D	S	L	I	L	D	T	P	E	S	P	L	A	D	A	V	A	N	V	L	T	M	T	L	L	K	K	A	Q	L	K	S	T	V	M	P	Q	V
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.
Template Sequence		V	F	Q	D	E	G	A	E	P	L	K	Q	R	V	E	A	S	I	S	K	A	S	S	F	L	G	E	K	A	S	A	G	L	L	G	A	H	A	A	A	I	T	A	Y	A	L	T	L	T	K	A	P	A	D	L	R	G	V	A	H	N	N	L	X	A	X	A	Q	E	T	.	.	.	.	.	.	.	.	G	D
Template Known Secondary structure		T			T	T	T	T																									T																	T	T															T	T					.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Template SS confidence
		1136	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.									.	.
		1258	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280		.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.								.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.																.	.	.	.	.	.	.
Query SS confidence																									.																.	.	.	.	.	.	.
Query Sequence		Q	Q	Y	A	W	D	K	A	A	N	S	N	Q	P	L	A	H	T	V	V	L	L	N	.	S	G	G	D	A	T	Q	T	A	A	I	L	S	G	L	.	.	.	.	.	.	.	T	A	E	Q	S	T	I	E	R	A	L	A	M	N	W	L	A	K	Y	M	A	T	M
Query Conservation																									.																.	.	.	.	.	.	.
Alig confidence																									.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	Y	W	G	Q	A	P	A	L	W	I	E	T	T	A	Y	A	L	L	H	L	L	L	H	E	G	K	A	E	X	A	D	Q	A	S	A	W	L	T	R	Q	G	S	F	Q	G	G	F	R	S	T	Q	D	T	V	I	A	L	D	A	L	S	A	Y	W	I	A	S
Template Known Secondary structure																											T		S	S														T	T	S	T	T		S		S
Template Predicted Secondary structure
Template SS confidence
		1208	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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