Job Description P76464 Confidence 48.46% Date Wed Jan 25 15:21:08 GMT 2012 Rank 150 Aligned Residues 201 % Identity 11% Template c1e07A_ PDB info PDB header:glycoprotein Chain: A: PDB Molecule:carcinoembryonic antigen; PDBTitle: model of human carcinoembryonic antigen by homology2 modelling and curve-fitting to experimental solution3 scattering data Resolution UNK

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		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Y	E	L	R	L	A	Y	R	N	Q	V	Y	S	S	S	F	R	V	A	N	Y	I	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q	L	L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	Y	T	C	Q	A	N	N	S	A	S	G	H	S	R	T	T	V	K	T	I	T	V	S	A	E	L	P	K	P	S	I	S	S	N	N	S	K	P	V	E	D	K	D	A	V	A	F	T	C	E	P	E	A	Q	N	T	T	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	T	T														S							T	T	T	T						T	T	S										S		S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	A	G	R	F	P	V	S	L	E	G	S	E	T	V	S	D	A	S	G	H	V	A	L	N	L	P	A	A	D	K	P	S	R	Y	L	L	T	V	S	A	S	D	G	A	A	Y	R	V	T	T	T	K	E	I	L	I	E	R	G	L	A	H	Y	S	L	S	T	A	A	Q	Y	S	N	S	G	E	S	V
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	W	W	V	N	G	Q	S	L	P	V	S	P	R	L	Q	L	S	N	G	N	R	T	L	T	L	F	N	V	T	R	N	D	A	R	A	Y	V	C	G	I	Q	N	S	V	S	A	N	R	S	D	P	V	T	L	D	V	L	Y	G	P	D	T	P	I	I	S	P	P	D	S	S	Y	L	S	G	A	N	L
Template Known Secondary structure		.	.					T	T	S				S	S						T	T							S	S			G	G	G		S									T	T	T	T														S		S	S												T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	R	Y	A	A	L	E	S	S	K	Q	V	P	V	T	Y	E	W	L	R	L	E	D	R	T	S	H	S	G	E	L	P	S	G	G	K	S	F	T	V	N	F	A	K	P	G	N	Y	N	L	T	L	R	D	K	D	G	L	I	L	A	G	L	S	H	A	V	S
Query Conservation
Alig confidence												.	.	.																				.	.	.	.
Template Conservation												.	.	.																				.	.	.	.
Template Sequence		N	L	S	C	H	S	A	S	N	P	.	.	.	S	P	Q	Y	S	W	R	I	N	G	I	P	Q	Q	H	T	Q	V	L	.	.	.	.	F	I	A	K	I	T	P	N	N	N	G	T	Y	A	C	F	V	S	N	L	A	T	G	R	N	N	S	I	V	K	S	I	T
Template Known Secondary structure								S	S		S	.	.	.	S								T	T							S	S		.	.	.	.							S													T	T	T	T
Template Predicted Secondary structure												.	.	.																				.	.	.	.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.				.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.					.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions