Job Description P76464 Confidence 97.25% Date Wed Jan 25 15:21:08 GMT 2012 Rank 27 Aligned Residues 259 % Identity 14% Template c1cwvA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:invasin; PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein Resolution 2.30 Å

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		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	T	D	R	P	L	Y	R	A	G	D	R	V	D	V	K	V	I	G	R	E	F	H	D	P	L	H	S	S	P	I	V	S	A	P	A	K	L	S	V	L	D	A	N	G	S	L	L	Q	T	V	N	V	T	L	D	A	R	N	G	G	Q	G	S	F	R	L	P	E	N	A	V	A	G	G	Y	E	L	R
Query Conservation
Alig confidence																								.	.	.	.																		.	.																							.	.	.
Template Conservation																								.	.	.	.																		.	.																							.	.	.
Template Sequence		V	I	G	D	G	A	P	A	N	G	K	T	A	I	T	V	E	F	T	V	A	D	.	.	.	.	F	E	G	K	P	L	A	G	Q	E	V	V	I	T	T	N	N	.	.	G	A	L	P	N	K	I	T	E	K	T	D	A	N	G	V	A	R	I	A	L	T	.	.	.	N	T	T	D	G	V	T	V	V	T
Template Known Secondary structure				S		S			S	S	S	S	S											.	.	.	.	T	T	S		B			S									T	.	.	T		B	S									T	T	S							B	.	.	.		S	S
Template Predicted Secondary structure																								.	.	.	.																		.	.																							.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530					.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.			.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.				570	.	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.			.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		L	A	Y	R	N	Q	V	Y	S	S	S	.	.	F	R	V	A	N	Y	I	K	P	H	F	E	I	G	L	A	L	A	K	K	E	F	K	T	G	E	A	V	S	G	K	L	Q	L	L	Y	P	D	G	E	P	V	K	N	A	R	V	Q	L	S	L	R	A	Q	Q	L	S	M	V	G	N	D	L	R	Y	A	G
Query Conservation													.	.
Alig confidence													.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	V	E	G	Q	R	Q	S	V	D	T	H	F	V	K	G	T	I	A	A	D	K	S	T	L	A	A	V	P	T	S	I	I	A	D	G	L	M	A	S	T	I	T	L	E	L	K	D	T	Y	G	D	P	Q	A	G	A	N	V	A	F	D	T	T	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T														B		G	G	G							S	S				T	T	S	S										B	B	T	T	S		B			S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.					.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		R	F	P	V	S	L	E	G	S	E	T	V	S	D	A	S	G	H	V	A	L	N	L	P	A	A	D	K	P	S	R	Y	L	L	T	V	S	A	S	D	G	A	A	Y	R	V	T	T	T	K	E	I	L	I	E	R	G	L	A	.	.	.	.	H	Y	S	L	S	T	A	A	Q	Y	S	N	S	G	E	S	V
Query Conservation																																																													.	.	.	.
Alig confidence		.	.	.	.	.	.																		.																																				.	.	.	.
Template Conservation		.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	N	M	G	V	I	T	D	H	N	D	G	T	Y	S	A	P	L	.	T	S	T	T	L	G	V	A	T	V	T	V	K	V	D	G	A	A	F	S	V	P	S	V	T	V	N	F	T	A	D	P	I	P	D	A	G	R	S	S	F	T	V	S	T	P	D	I	L	A	D	G	T	M	S	S
Template Known Secondary structure		.	.	.	.	.	.									S	S	S							.			S	S											T	T																S	S			T	T	T						S		S				T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																		.
Template SS confidence
								647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.		.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.
		581	.	.	.	.	.	.	.	.	590	.					.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		V	F	R	Y	A	A	L	E	S	S	K	.	.	.	.	Q	V	P	V	T	Y	E	W	L	R	L	E	D	R	T	S	H	S	G	E	L	P	S	G	G	K	S	F	T	V	N	F	A	K	P	G	N	Y	N	L	T	L	R
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		T	L	S	F	V	P	V	D	K	N	G	H	F	I	S	G	M	Q	G	L	S	F	T	Q	N	G	V	P	V	S	I	S	P	I	T	E	Q	P	D	S	Y	T	A	T	V	V	G	N	S	V	G	D	V	T	I	T	P	Q
Template Known Secondary structure								B		T	T	S		B			S			S								S											S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions