Job Description P67444 Confidence 100.00% Date Thu Jan 5 12:10:37 GMT 2012 Rank 1 Aligned Residues 401 % Identity 23% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	F	E	L	E	D	R	P	P	F	H	Q	A	L	V	G	A	I	T	H	L	L	A	I	F	V	P	M	V	T	P	A	L	I	V	G	A	A	L	Q	L	S	A	E	T	T	A	Y	L	V	S	M	A	M	I	A	S	G	I	G	T	W	L	Q	V	N	R	Y	G	I	V	G	S	G	L	L	S	I	Q
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		R	A	I	G	V	S	E	R	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	M	F	G	A	T	V	L	V	P	V	L	F	H	I	N	.	.	.	.	.	.	.	.	.	.	.	P	A	T	V	L	L	F	N	G	I	G	T	L	L	Y	L	F	I	.	.	.	C	K	G	K	I	P	A	Y	L
Template Known Secondary structure				B		T	T																													T	T	T	S		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.												.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	N	F	S	F	V	T	V	M	I	A	L	G	S	S	M	K	S	D	G	F	H	E	E	L	I	M	S	S	L	L	G	V	S	F	V	G	A	F	L	V	V	G	S	S	F	I	L	P	Y	L	R	R	V	I	T	P	T	V	S	G	I	V	V	L	M	I	G	L	S	L	I	K	V	G	I	I	D	F
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		G	S	S	F	A	F	I	S	P	V	L	L	L	L	P	L	G	Y	.	.	.	.	.	E	V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A
Template Known Secondary structure					G	G	G								G	G	G			.	.	.	.	.																							T	T		S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	G	F	A	A	K	S	S	G	T	F	G	N	Y	E	H	L	G	V	G	L	L	V	L	I	V	V	I	G	F	N	C	C	R	S	P	L	L	R	M	G	G	I	A	I	G	L	C	V	G	Y	I	A	S	L	C	L	G	M	V	D	F	S	S	M	R	N	L	P	L	I	T	I	P	H	P	F	K	Y
Query Conservation
Alig confidence											.	.	.																																																																			.	.
Template Conservation											.	.	.																																																																			.	.
Template Sequence		G	L	L	P	A	E	G	Q	T	.	.	.	P	D	S	K	T	I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	D	T	T	P	I	I	N	A	H	W	F	A	L	P	T	L	Y	.	.
Template Known Secondary structure		T	S	S		B	T	T	B		.	.	.																						S	S	S	T	T	T	T	T																				T	T	S	S					S		S	S							.	.
Template Predicted Secondary structure											.	.	.																																																																			.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	S	F	S	F	H	Q	F	L	V	V	G	T	I	Y	L	L	S	V	L	E	A	V	G	D	I	T	A	T	A	M	V	S	R	R	P	I	Q	G	E	E	Y	Q	S	R	L	K	G	G	V	L	A	D	G	L	V	S	V	I	A	S	A	V	G	S	L	P	L	T	T	F	A	Q	N	N	G	V	I	Q
Query Conservation
Alig confidence																																						.	.	.
Template Conservation																																						.	.	.
Template Sequence		T	P	R	F	E	W	F	A	I	L	T	I	L	P	A	A	L	V	V	I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	K	.	.	.	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A
Template Known Secondary structure														T																						T	S	.	.	.		T																								T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.				.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		M	T	G	V	A	S	R	Y	V	G	R	T	I	A	V	M	L	V	I	L	G	L	F	P	M	I	G	G	F	F	T	T	I	P	S	A	V	L	G	G	A	M	T	L	M	F	S	M	I	A	I	A	G	I	R	I	I	I	T	N	G	L	K	.	.	.	R	R	E	T	L	I	V	A	T	S	L	G	L	G
Query Conservation																																																																	.	.	.
Alig confidence																																																																	.	.	.
Template Conservation
Template Sequence		I	T	R	V	Y	S	T	W	V	I	G	G	A	A	I	F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G
Template Known Secondary structure				T	B																	T										T	T	S																											T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	S	Y	D	P	E	I	F	K	I	L	P	A	S	I	Y	V	L	V	E	N	P	I	C	A	G	G	L	T	A	I	L	L	N	I	I	L	P
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.
Template Sequence		V	S	G	A	K	V	N	.	.	.	.	.	.	.	.	.	I	G	A	A	E	L	K	G	M	A	L	A	T	I	V	G	I	G	L	S	L	I	F	K
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	S	S	S																					T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Template SS confidence
		377	.	.	380	.	.	.										.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.