Job Description P67444 Confidence 24.34% Date Thu Jan 5 12:10:37 GMT 2012 Rank 3 Aligned Residues 299 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	L	R	R	V	I	T	P	T	V	S	G	I	V	V	L	M	I	G	L	S	L	I	K	V	G	I	I	D	F	G	G	G	F	A	A	K	S	S	G	T	F	G	N	Y	E	H	L	G	V	G	L	L	V	L	I	V	V	I	G	F	N	C	C	R	S	P	L	L	R	M	G	G	I	A	I	G	L	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A
Template Known Secondary structure		S	S	S	S																															T	T	T	S																			T	T	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		220	.	.	.	.	.	.	.	.	.	230	.																												.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	Y	I	A	S	L	C	L	G	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	S	S	M	R	N	L	P	L	I	T	I	P	H	P	F	K	Y	G	F	S	F	S	F	H	Q	F	L	V	V	G	T	I	Y	L	L	S	V	L	E
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S																									T			T	T	T	T	S	S								T	T										T	T								.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	D	I	T	A	T	A	M	V	S	R	R	P	I	Q	G	E	E	Y	Q	S	R	L	K	G	G	V	L	A	D	G	L	V	S	V	I	A	S	A	V	G	S	L	P	L	T	T	F	A	Q	N	N	G	V	I	Q	M	T	G	V	A	S	R	Y	V	G	R	T	I	A	V	M	L	V	I	L	G	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	A	R	I	S	R	.	.	.	.	.	.	.	.	.	.	.	.	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H
Template Known Secondary structure		.	.	.	.	.	.	.					T	T	.	.	.	.	.	.	.	.	.	.	.	.	T																																				T						T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									385	.	.	.	.	390													.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.			.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		F	P	M	I	G	G	F	F	T	T	I	P	S	A	V	L	G	G	A	M	T	L	M	F	S	M	I	A	I	A	G	I	R	I	I	I	T	N	G	L	K	R	R	E	T	L	I	V	A	T	S	L	G	L	G	L	G	V	S	Y	D	P	E	I	.	.	F	K	I	L	P	A	S	I	Y	V	L	V	E	N
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A
Template Known Secondary structure		T	S	T	T																															T	T	T	T		S	S																									G	G	G
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	C	A	G	G	L	T	A	I	L	L	N	I	I	L	P	G	G	Y	R	Q	E	N	V	L	P	G	I	T	S	A	E	E	M	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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