Job Description P0A953 Confidence 92.65% Date Thu Jan 5 11:09:24 GMT 2012 Rank 109 Aligned Residues 192 % Identity 16% Template c3lmaC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. Resolution 1.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Y	A	F	L	S	M	E	Q	A	I	A	D	A	G	L	S	P	E	A	Y	Q	N	N	P	R	V	G	L	I	A	G	S	G	G	G	S	P	R	F	Q	V	F	G	A	D	A	M	R	G	P	R	G	L	K	A	V	G	P	Y	V	V	T	K	A	M	A	S	G	V	S	A	C	L	A	T	P	F	K
Query Conservation
Alig confidence																										.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	L	X	E	D	A	V	Q	S	A	L	S	K	Q	N	L	K	K	E	D	I	D	I	.	.	.	.	.	F	L	A	G	D	L	L	N	Q	N	V	T	A	N	Y	V	A	R	H	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	T			G	G	G		S		.	.	.	.	.						T	T		S	S	S	S									T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		I	H	G	V	N	Y	S	I	S	S	A	C	A	T	S	A	H	C	I	G	N	A	V	E	Q	I	Q	L	G	K	Q	D	I	V	F	A	G	G	G	E	E	L	C	W	E	M	A	C	E	F	D	A	M	G	A	L	S	T	K	Y	N	D	T	P	E	.	.	K	A	S	R	T	Y	D	A	H	R	D	G	F
Query Conservation																																																																			.	.
Alig confidence		.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.														.	.											.	.	.
Template Conservation		.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		.	.	.	P	F	L	C	L	F	G	A	C	S	T	S	X	E	S	I	A	I	S	S	A	L	I	D	G	G	F	A	K	R	A	L	A	A	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	H	N	A	T	A	E	R	Q	F	R	Y	P	T	E	Y	G	G	Q	K	P	G	T	A	T	S	.	.	.
Template Known Secondary structure		.	.	.								S	T	T															T	T	S		S									.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	G	G	G	G	T				G	G	G	T					S	S				.	.	.
Template Predicted Secondary structure		.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
					102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.													.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																						.																.	.	.	.
Query SS confidence																																						.																.	.	.	.
Query Sequence		V	I	A	G	G	G	G	M	V	V	V	E	E	L	E	H	A	L	A	R	G	A	H	I	Y	A	E	I	V	G	Y	G	A	T	S	D	.	G	A	D	M	V	A	P	S	G	E	G	A	V	R	C	.	.	.	.	M	K	M	A	M	H	G	V	D	T	P	I	D	Y	L	N	S	H	G	T	S	T	P	V
Query Conservation																																						.																.	.	.	.
Alig confidence		.														.	.	.	.	.	.																	.																.	.	.	.																								.
Template Conservation		.														.	.	.	.	.	.																																																												.
Template Sequence		.	T	V	T	G	S	G	A	V	V	L	S	Q	Q	.	.	.	.	.	.	P	G	G	I	K	I	T	S	A	T	V	G	R	V	I	D	L	G	I	T	D	S	Q	D	X	G	S	A	X	A	P	A	A	A	D	T	I	K	Q	H	L	E	D	L	G	R	T	P	D	D	Y	D	L	I	L	T	G	D	L	.
Template Known Secondary structure		.												S	S	.	.	.	.	.	.			S												B							T	T																						T			G	G	G		S					S	S		.
Template Predicted Secondary structure		.														.	.	.	.	.	.																																																												.
Template SS confidence
			164	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	V	K	E	L	A	A	I	R	E	V	F	G	D	K	S	P	A	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	S	G	V	G	S	P	I	L	K	D	L	L	K	E	E	G	I	N	V
Template Known Secondary structure		.															T	T
Template Predicted Secondary structure		.
Template SS confidence
			236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions