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Job DescriptionP0A953
Confidence100.00%DateThu Jan 5 11:09:24 GMT 2012
Rank17Aligned Residues402
% Identity38%Templatec2ix4B_
PDB info PDB header:transferaseChain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase; PDBTitle: arabidopsis thaliana mitochondrial beta-ketoacyl acp2 synthase hexanoic acid complex
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.. .......50......... 60.....
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Query Sequence  KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDS. . . . . . . . . . . . . . GMRSHVWGNVKLDTTGL. IDRKVV.
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Template Sequence  RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL
Template Known Secondary structure 

TTSTT




SGGG

TTS

S




BSSSTTSB
S
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   31........40.........50.........60.........70.........80.........90.........100.........110
 
   66...70.........80.........90.........100.........110.........120.........130.........140...
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Query Sequence  . . RFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVS
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Template Sequence  NSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLIC. EKRLRRLSPFFIPKILVNMAS
Template Known Secondary structure 
STT

TT



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.TT
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   111........120.........130.........140.........150.........160........ .170.........180.........
 
   144.....150.........160.........170.........180.........190......... 200.........210.........220..
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Query Sequence  ACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMAC. EFDAMGALSTKYNDTPEKASRTY
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Template Sequence  GHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPF
Template Known Secondary structure  T

S




GGGTS
S


STT
B

TTTTSGGGS

TT
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   190.........200.........210.........220.........230.........240.........250.........260.........
 
   223......230.........240.........250.........260.........270.. .......280.........290 .......
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Query Sequence  DAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP. . SGEGAVRCMKMAMHGVDT. . . PIDYLNS
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Template Sequence  DCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNA
Template Known Secondary structure  BTT

SB
BB
TT





S
SS


TT
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GGG


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   270.........280.........290.........300.........310.........320.........330.........340.........
 
   298.300.........310......... 320.........330.........340.........350.........360.........370...
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Query Sequence  HGTSTPVGDVKELAAIREVFGD. . . . KSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNI
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Template Sequence  HATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFM
Template Known Secondary structure 


S
TS
S
T
B
GGGT


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SSB
TT
BTTB
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   350.........360.........370.........380.........390.........400.........410.........420.........
 
   374.....380.........390.........400....
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Query Sequence  . VTETTDRELTTVMSNSFGFGGTNATLVMRKL
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Template Sequence  PLTTSKKMLVRTAMSNSFGFGGTNASLLFASI
Template Known Secondary structure 


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STTT

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   430.........440.........450.........460.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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