Job Description P0A953 Confidence 99.83% Date Thu Jan 5 11:09:24 GMT 2012 Rank 68 Aligned Residues 307 % Identity 17% Template c1mzjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:beta-ketoacylsynthase iii; PDBTitle: crystal structure of the priming beta-ketosynthase from the2 r1128 polyketide biosynthetic pathway Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		M	K	R	A	V	I	T	G	L	G	I	V	S	S	I	G	.	N	N	Q	Q	E	V	L	A	S	L	R	E	G	R	S	G	I	T	F	S	Q	E	L	K	D	S	G	M	R	S	H	V	W	G	N	V	K	L	D	T	T	G	L	I	D	R	K	V	V	R	F	M	S	D	A	S	I	Y	A	F	L	S	M
Query Conservation																		.
Alig confidence																		.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	F	S	R	V	L	G	V	G	S	Y	R	P	R	R	E	V	S	N	K	E	V	C	T	W	I	D	S	T	E	E	W	I	E	T	R	T	G	I	R	S	R	R	I	A	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	T	I	Q	V	M	G	V	A	A	S
Template Known Secondary structure																S									T	T	T	S	S			T	T					S	S			S							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																					.	.	.	60	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		E	Q	A	I	A	D	A	G	L	S	P	E	A	Y	Q	N	N	P	R	V	G	L	I	A	G	S	G	G	G	S	P	R	F	Q	V	F	G	A	D	A	M	R	G	P	R	G	L	K	A	V	G	P	Y	V	V	T	K	A	M	A	S	G	V	S	A	C	L	A	T	P	F	K	I	H	.	G	V	N	Y	S
Query Conservation																																																																												.
Alig confidence																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	A	L	E	H	A	G	V	D	P	A	E	I	D	L	.	.	.	.	.	V	V	V	S	T	M	T	N	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	P	P	L	S	V	A	I	A	H	E	L	G	A	D	N	A	G	G	F	D
Template Known Secondary structure									T			G	G	G				.	.	.	.	.						S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S											T		T	T
Template Predicted Secondary structure																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.																												.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	A	C	A	T	S	A	H	C	I	G	N	A	V	E	Q	I	Q	L	G	K	Q	D	I	V	F	A	G	G	G	E	E	L	C	W	E	M	A	C	E	F	D	A	M	G	A	L	S	T	K	Y	N	D	T	P	E	K	A	S	R	T	Y	D	A	H	R	D	G	F	V	I	A	G	G	G	G	M	V
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	A	A	C	A	G	F	C	H	A	L	S	I	A	A	D	A	V	E	S	G	G	S	R	H	V	L	V	V	A	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	M	T	D	V	I	D	L	A	D	R	S	L	S	F	L	F	G	D	G	A	G	A	A	V	V	G	P	S	D	V	P	G
Template Known Secondary structure					G	G	G															T	T	S		S									.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	S		T	T		T	T	T	T	T	T	B													S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.															150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.													.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		V	V	E	E	L	E	H	A	L	A	R	G	A	H	I	Y	A	E	I	V	G	Y	G	A	T	S	D	G	A	D	M	V	A	P	S	G	.	.	.	.	.	.	.	.	.	.	.	.	E	G	A	V	R	C	M	K	M	A	M	H	G	V	D	T	.	.	.	P	I	D	Y	L	N	S	H	G	T	S	T	P
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		I	G	P	V	V	R	G	I	D	G	T	G	L	G	S	L	H	M	S	S	S	W	D	Q	Y	V	E	D	P	S	V	G	R	P	A	L	V	M	D	G	K	R	V	F	R	W	A	V	A	D	V	V	P	A	A	R	E	A	L	E	V	A	G	L	T	V	G	D	L	V	A	F	V	P	H	Q	A	N	L	R
Template Known Secondary structure		B									G	G	G	T	T	T				S							T	T		T	T	S		S																													T	T			G	G	G		S							S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		V	G	D	V	K	E	L	A	A	I	R	E	V	F	G	D	K	S	.	P	A	I	S	A	T	K	A	M	T	G	H	S	L	G	A	A	G	V	Q	E	A	I	Y	S	L	L	M	L	E	H	G	F	I	A	P	S	I	N	I	E	E	L	D	E	Q	A	A	G	L	N	I	V	T	E	T	T	D	R	E	L
Query Conservation																				.
Alig confidence								.	.	.	.	.								.																								.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.																																.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	D	V	L	V	.	.	.	.	.	D	R	L	G	V	P	E	H	V	V	V	S	R	D	A	E	D	T	G	N	T	S	S	A	S	V	A	L	A	L	D	.	.	.	R	L	V	R	S	G	A	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Known Secondary structure								.	.	.	.	.				T			S	S	S					T						B		T	T									.	.	.				T	T	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure								.	.	.	.	.																																.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.																									.	310
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	V	M	S	N	S	F	G	F	G	G	T	N	A	T	L	V	M	R	K	L	K	D
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		G	P	A	L	M	I	G	F	G	A	G	L	S	Y	A	G	Q	A	L	.	L	L	P	D
Template Known Secondary structure											T	T	T								.
Template Predicted Secondary structure																					.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions