Job Description P37342 Confidence 6.71% Date Thu Jan 5 11:55:22 GMT 2012 Rank 79 Aligned Residues 90 % Identity 18% Template c3n4pA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:terminase subunit ul89 protein; PDBTitle: human cytomegalovirus terminase nuclease domain Resolution 2.15 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		V	I	C	D	M	F	E	G	H	A	P	Y	K	P	R	Y	V	L	P	D	Y	A	R	F	L	A	N	G	S	E	W	L	E	L	E	G	A	K	D	L	D	D	A	L	S	L	L	T	I	L	Y	H	H	V	P	S	V	T	.	.	.	.	S	M	P	V	Y	L	G	Q	L	D	A	L	L	Q	P	Y	V	R
Query Conservation																																																												.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.									.									.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.									.
Template Sequence		E	L	R	I	A	V	E	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	Q	A	A	A	V	R	I	A	C	L	I	R	Q	S	V	Q	S	S	T	L	I	R	V	L	F	Y	H	T	P	D	Q	.	N	H	I	E	Q	P	F	Y	.
Template Known Secondary structure								B		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																																T	.	T	T				S		B	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.									.
Template SS confidence
		528	.	530	.	.	.	.	.	.																													.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.		570	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		I	L	T	Q	D	E	I	D	V	R	I	K	R	F	W	R	Y	L	D	R	T	L	.	.	.	P	D	A	F	M	H	A	N	I	G	P	S	D	S	P	I	T	R	A	I	L	R	A
Query Conservation																								.	.	.
Alig confidence		.																						.	.	.
Template Conservation		.
Template Sequence		.	L	M	G	R	D	K	A	L	A	V	E	Q	F	I	S	R	F	N	S	G	Y	I	K	A	S	Q	E	L	V	S	Y	T	I	K	L	S	H	D	P	I	E	Y	L	L	E	Q	I
Template Known Secondary structure		.			S	T															T	T											S	S	S	B	T	T	B
Template Predicted Secondary structure		.
Template SS confidence
			578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions