Job Description P32690 Confidence 100.00% Date Thu Jan 5 11:50:14 GMT 2012 Rank 2 Aligned Residues 384 % Identity 17% Template c2qzaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa Resolution 2.80 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		V	I	S	K	V	S	F	L	S	S	N	L	Q	H	V	T	F	E	C	K	E	I	G	D	.	C	N	F	T	T	A	I	V	D	N	V	I	F	R	C	R	R	L	H	N	V	I	F	I	K	A	S	G	E	C	V	D	F	S	K	N	I	L	D	T	V	D	F	S	Q	S	Q	L	G	H	S	N	F	R	E
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		T	A	A	D	R	D	F	S	N	A	D	F	R	N	I	T	F	S	K	I	L	P	P	S	F	X	E	R	D	G	D	I	I	K	G	F	N	F	S	N	S	K	F	T	Y	S	D	I	S	H	L	H	F	D	E	C	R	F	T	Y	S	T	L	S	D	V	V	C	S	N	T	K	F	S	N	S	D	X	N	E
Template Known Secondary structure			T	G	G	G	B		T	T		B		T	T		B	G	G	G	S	S		G	G	G	G	S	S	S						S		B			S		B		S	S		B		T	T					S		B		T	T		B		T	T		B		T	T					S		B			S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		115	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure														.	.													.
Query SS confidence														.	.													.
Query Sequence		C	Q	I	R	N	S	N	F	D	N	C	Y	.	.	L	Y	A	S	H	F	T	R	A	E	F	L	.	S	A	K	E	I	S	F	I	K	S	N	L	T	A	V	M	F	D	Y	V	R	M	S	T	G	N	F	K	D	C	I	T	E	Q	L	E	L	T	I	D	Y	S	D	I	F	W	N	E	D	L	D	G	Y
Query Conservation														.	.													.
Alig confidence														.	.													.			.	.	.																	.	.
Template Conservation																															.	.	.																	.	.
Template Sequence		V	F	L	Q	Y	S	I	T	T	Q	Q	Q	P	S	F	I	D	T	T	L	K	N	T	L	I	R	H	K	A	.	.	.	N	L	S	G	V	I	L	N	E	P	D	N	S	S	P	P	.	.	S	V	S	G	G	G	N	F	I	R	L	G	D	I	W	L	Q	X	P	L	L	W	T	E	N	A	V	D	G	F
Template Known Secondary structure								T	T			S										T	T					S			.	.	.																	.	.			S	S		S						T	T							S	S
Template Predicted Secondary structure																															.	.	.																	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		192	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure				.	.	.	.	.	.	.																																		.	.	.
Query SS confidence				.	.	.	.	.	.	.																																		.	.	.
Query Sequence		I	N	.	.	.	.	.	.	.	N	I	I	K	M	I	D	T	L	P	D	N	A	M	I	L	K	S	V	L	A	V	K	L	V	M	Q	L	K	I	L	N	I	.	.	.	V	N	K	N	F	I	E	N	M	K	K	I	F	S	H	C	P	Y	I	K	D	P	I	I	R	S	Y	I	H	S	D	E	D	N	K
Query Conservation				.	.	.	.	.	.	.																																		.	.	.
Alig confidence				.	.	.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		L	N	H	E	H	N	N	G	K	S	I	L	X	T	I	D	S	L	P	D	K	Y	S	Q	E	K	V	Q	A	X	E	D	L	V	K	S	L	R	G	G	R	L	T	E	A	C	I	R	P	V	E	S	S	L	V	S	V	L	A	H	P	P	Y	T	Q	S	A	L	I	S	E	W	L	G	P	V	Q	E	R	F
Template Known Secondary structure				G	G	G	T	T	T		S							S	S		T	T		T	T															S	S				T	T	T	S	G	G	G									T	S	T	T	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																																							.	.
Query SS confidence																	.	.	.	.	.																																							.	.
Query Sequence		F	D	D	F	M	R	Q	H	R	F	S	E	V	N	F	.	.	.	.	.	D	T	Q	Q	M	I	D	F	I	N	R	F	N	T	N	K	W	L	I	D	K	N	N	N	F	F	I	Q	L	I	D	Q	A	L	R	S	T	D	.	.	D	M	I	K	A	N	V	W	H	L	Y	K	E	W	I	R	S	D	D	V
Query Conservation																	.	.	.	.	.																																							.	.
Alig confidence																	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		F	A	H	Q	C	Q	T	Y	N	D	V	P	L	P	A	P	D	T	Y	Y	Q	Q	R	I	L	P	V	L	L	D	S	F	D	R	N	S	A	A	X	T	T	H	S	G	L	F	N	Q	V	I	L	H	C	X	T	G	V	D	C	T	D	G	T	R	Q	K	A	A	A	L	Y	E	Q	Y	L	A	H	P	A	V
Template Known Secondary structure										S	S	S													T										T	T	T	T					T												T	T		T	T																			S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		S	P	I	F	I	E	T	E	D	N	L	R	T	F	N	T	N	E	L	T	R	N	D	N	.	.	I	F	I	L	F	S	S	V	D	D	G	P	V	M	V	V	S	S	Q	R	L	H	D	M	L	N	P	T	K	D	T	N	W	N	S	T	Y	I	Y	K	S	R	H	E	M	L	P	V	N	L	T	Q	E	T
Query Conservation																										.	.
Alig confidence												.	.													.	.
Template Conservation												.	.
Template Sequence		S	P	H	I	H	N	G	L	F	G	.	.	N	Y	D	G	S	P	D	W	T	T	R	A	A	D	N	F	L	L	L	S	S	Q	D	S	D	T	A	X	X	L	S	T	D	T	L	L	T	X	L	N	P	T	P	D	T	A	W	D	N	F	Y	L	L	R	A	G	E	N	V	S	T	A	Q	I	S	P	V	E
Template Known Secondary structure		G	G	G			T	T	T	S	T	.	.	T	S	S	S	S			T	T		T	T	S								S	S		T	T															S			T	T				S		S					S	S	S					S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.	.			.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	S	S	K	S	H	G	K	Y	A	L	F	P	I	F	T	A	S	W	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		L	F	R	H	D	.	.	.	.	.	.	.	F	P	V	F	L	A	A	F	N
Template Known Secondary structure				T	T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		584	.	.	.	.								.	590	.	.	.	.	.	.	.