Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 1 Aligned Residues 429 % Identity 98% Template c3uagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase Resolution 1.77 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Y	Q	G	K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	Y	Q	G	K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S
Template Known Secondary structure					T	T									S												T	T	T								S	S	S	S		T	T	G	G	G	S		T	T	S					S	S							T	T		S						T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	I	G	L	P	A	L	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	I	G	L	P	A	L	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S
Template Known Secondary structure								T	T																S								S	S																T	T								T	T	S	S		G	G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	L	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	A	D	E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N
Query Conservation
Alig confidence																														.																																.	.	.	.
Template Conservation																														.																																.	.	.	.
Template Sequence		F	Q	L	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	.	F	G	L	Q	Q	Y	R	A	A	L	R	I	Y	E	N	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	.	.	.	.	E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N
Template Known Secondary structure						T							S									S			G	G	G		T	.	T										G	G	G	T	T		S						T	T		G	G	G				.	.	.	.								S	S	S	S	S
Template Predicted Secondary structure																														.																																.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	Q	G	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		H	.	.	.	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A
Template Known Secondary structure			.	.	.							T	T						G	G	G		S			S																	T	T																	T	T	S	S							T	T							T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		241				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	G	S	T	E	A	A	L	N	G	L	H	V	D	G	T	L	H	L	L	L	G	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	G	R	D	G	A	Q	L	A	A	L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	V	G	S	T	E	A	A	L	N	G	L	H	V	D	G	T	L	H	L	L	L	G	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	G	R	D	G	A	Q	L	A	A	L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R
Template Known Secondary structure			S									T	T				S	S								S	B		T	T				G	G	G	G	G	G	S		S	T	T							S	T	T						T	T	S	G	G	G					S	S									G	G	G
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L	G
Template Known Secondary structure				T	T								S	S	B	S	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.