Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 2 Aligned Residues 432 % Identity 29% Template c3lk7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.																							.
Query SS confidence																																											.	.	.																							.
Query Sequence		M	A	D	Y	Q	G	K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	.	.	.	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	N	D	E	W	L	.	M	A	A	D	L	I	V	A	S	P	G	I	A
Query Conservation																																											.	.	.																							.
Alig confidence																																											.	.	.																							.
Template Conservation
Template Sequence		I	T	T	F	E	N	K	K	V	L	V	L	G	L	A	R	S	G	E	A	A	A	R	L	L	A	K	L	G	A	I	V	T	V	N	D	G	K	P	F	D	E	N	P	T	A	Q	S	L	L	E	E	G	I	K	V	V	C	G	S	H	P	L	E	L	L	D	E	D	F	C	Y	X	I	K	N	P	G	I	P
Template Known Secondary structure				T	T	T	T									T	T	T											T	T								S	S		G	G	G										T	T						S				G	G	G	G	G	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		L	A	H	P	S	L	S	A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	I	G	L	P	A	L	M	L	.	.	L	D	D	E	C	E	L
Query Conservation																																																																									.	.
Alig confidence																																																																									.	.
Template Conservation
Template Sequence		Y	N	N	P	X	V	K	K	A	L	E	K	Q	I	P	V	L	T	E	V	E	L	A	Y	L	V	S	E	S	Q	L	I	G	I	T	G	S	N	G	K	T	T	T	T	T	X	I	A	E	V	L	N	A	G	G	Q	R	G	L	L	A	G	N	I	G	F	P	A	S	E	V	V	Q	A	A	N	D	K	D	T
Template Known Secondary structure		T	T	S									T	T																S								S	S																T	T								T	S	S	S						T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230
Predicted Secondary structure																																																					.	.	.																			.
Query SS confidence																																																					.	.	.																			.
Query Sequence		Y	V	L	E	L	S	S	F	Q	L	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	.	.	.	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	.	A	D	E	R	C	V	S
Query Conservation																																																					.	.	.																			.
Alig confidence																																					.																.	.	.																			.
Template Conservation																																					.
Template Sequence		L	V	X	E	L	S	S	F	Q	L	X	G	V	K	E	F	R	P	H	I	A	V	I	T	N	L	X	P	T	H	L	D	Y	H	G	.	S	F	E	D	Y	V	A	A	K	W	N	I	Q	N	Q	X	S	S	S	D	F	L	V	L	N	F	N	Q	G	I	S	K	E	L	A	K	T	T	K	A	T	I	V	P
Template Known Secondary structure												T	T		S	S				S									S							S	.	S										G	G	G	T	T			T	T	S						T	T	S								T	T		S	S
Template Predicted Secondary structure																																					.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	N	M	G	D	Y	H	L	N	H	Q	Q	G	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		F	S	T	T	E	K	V	D	G	A	Y	V	Q	D	K	.	.	Q	L	F	Y	K	G	E	N	I	X	S	V	D	D	I	G	V	P	G	S	H	N	V	E	N	A	L	A	T	I	A	V	A	K	L	A	G	I	S	N	Q	V	I	R	E	T	L	S	N	F	G	G	V	K	H	R	L	Q	S	L	G	K	V
Template Known Secondary structure				S	S	S			S	S					T	T	.	.					T	T						G	G	G	S	S	S		S																		T																	T	T	S	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	V	D	G	T	L	H	L	L	L	G	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	G	R	D	G	A	Q	L	A	A	L	R	P	E	.	.	.	V	A	E	Q
Query Conservation																																																																											.	.	.
Alig confidence																											.																																	.															.	.	.
Template Conservation																											.																																	.
Template Sequence		H	G	I	S	F	Y	N	D	S	K	S	T	N	I	L	A	T	Q	K	A	L	S	G	F	D	.	N	T	K	V	I	L	I	A	G	G	L	D	R	G	N	E	F	D	E	L	I	P	D	I	T	G	L	K	H	X	V	V	.	L	G	E	S	A	S	R	V	K	R	A	A	Q	K	A	G	V	T	Y	S	D
Template Known Secondary structure		T	T							T	T			S										T	S		.	G	G	G								S			S				G	G	G					T	T		S					.		S	T	T											T	T
Template Predicted Secondary structure																											.																																	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	D	V	R	D	A	V	H	K	A	Y	E	V	A	Q	Q	G	D	V	I	L	L	S	P	A	N	A	S	W	D	X	Y	K	N	F	E	V	R	G	D	E	F	I	D	T	F	E	S	L
Template Known Secondary structure			S	S														T	T								S	S		S	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.