Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 4 Aligned Residues 420 % Identity 18% Template c3hn7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution Resolution 1.65 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																		.																													.
Query SS confidence																		.																													.
Query Sequence		G	K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	.	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	E	.	A	V	E	R	H	T	G	S	L	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S
Query Conservation																		.																													.
Alig confidence																		.																													.
Template Conservation
Template Sequence		G	X	H	I	H	I	L	G	I	C	G	T	F	X	G	S	L	A	L	L	A	R	A	L	G	H	T	V	T	G	S	D	A	N	I	Y	P	P	X	S	T	Q	L	E	Q	A	G	V	T	I	E	E	G	Y	L	I	A	H	L	Q	P	A	P	D	L	V	V	V	G	N	A	X	K	R	G	X	D	V	I	E
Template Known Secondary structure									T	T	T	S													T	T								S				T	T								T	T						S			G	G	G	G		S			S						T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																																	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	.	.	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	.	V	G	G	N	I	G	L	P	A	L	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.																																	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																																	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	X	L	D	T	G	L	R	Y	T	S	G	P	Q	F	L	S	E	Q	V	L	Q	S	R	H	V	I	A	V	A	G	T	H	G	K	T	T	T	T	T	X	L	A	W	I	L	H	Y	A	G	I	D	A	G	F	L	I	G	G	V	P	L	V	N	T	T	D	T	N	L	Q	Q	V	F	A	H	S	S	Y	L
Template Known Secondary structure							T														T	G	G	G	S								S	S																T	T								S			B				S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
										148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F	Q	L	E	T	T	S	.	.	.	.	.	.	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	A	K	V	C	V	V	N	A
Query Conservation		.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																						.	.	.	.	.	.																							.	.	.	.
Template Conservation																																																											.	.	.	.
Template Sequence		G	T	E	K	D	D	S	D	N	S	V	N	T	G	Y	F	V	I	E	A	D	E	Y	D	S	A	F	F	D	K	R	S	K	F	V	H	Y	R	P	R	T	A	I	L	N	N	L	E	F	D	D	L	D	A	I	Q	T	.	.	.	.	Q	F	H	H	X	V	R	X	I	P	S	T	G	K	I	I	X	P	A
Template Known Secondary structure							S	S		T	T												S				B	T	T	B											S																		.	.	.	.							T	T	S		T	T	S						S
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure												.	.																						.	.	.	.	.	.
Query SS confidence												.	.																						.	.	.	.	.	.
Query Sequence		D	D	A	L	T	M	P	I	R	G	.	.	A	D	E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N	H	Q	Q	.	.	.	.	.	.	G	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L
Query Conservation												.	.																						.	.	.	.	.	.
Alig confidence												.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	I	S	L	E	D	T	L	A	K	G	V	W	T	P	I	W	R	T	S	V	I	D	N	S	S	D	W	Q	A	E	L	I	S	A	D	G	S	Q	F	T	V	S	F	N	D	N	K	E	A	T	A	L	V	N	W	S	X	S	G	L	H	N	V	N	N	A	L	V	A	I	A	A	A	Y	N	I	G	V
Template Known Secondary structure		S										T				S													S								T	T	T	T							T	T											S			S																	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.				.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.											.	.	.
Query SS confidence																																																				.	.	.											.	.	.
Query Sequence		P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	.	.	.	V	D	G	T	L	H	L	L	L	G	.	.	.	G	D	G	K	S	A	D	F	S	P	L	A	R	Y
Query Conservation																																																				.	.	.											.	.	.
Alig confidence																																			.																	.	.	.											.	.	.
Template Conservation																																			.
Template Sequence		S	V	K	T	A	C	A	A	L	S	A	F	A	G	I	K	R	R	X	E	L	I	G	D	V	N	D	I	L	V	F	D	D	.	F	A	H	H	P	T	A	I	T	T	T	L	D	G	A	K	K	K	L	A	D	R	R	L	W	A	I	I	E	P	R	S	N	T	X	K	X	G	I	H	Q	D	S	L	A	Q
Template Known Secondary structure												T				B	T	T	S	S							T	T							.				S																T	T	S												S	S			S			T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.												.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	G	D	N	V	R	L	Y	C	F	G	R	D	G	.	.	.	.	.	.	.	.	.	.	.	A	Q	L	A	A	L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																																					.										.	.	.	.	.	.
Template Conservation																																																																.										.	.	.	.	.	.
Template Sequence		S	A	T	L	A	D	H	T	L	W	Y	E	P	T	G	L	E	W	G	L	K	E	V	I	D	N	A	T	I	A	N	P	S	I	G	S	Q	Q	V	L	S	S	V	D	D	I	I	K	H	I	C	T	H	A	K	A	G	D	A	I	V	I	.	X	S	N	G	G	F	E	G	I	.	.	.	.	.	.	H	Q
Template Known Secondary structure			T	T	T	S	S								T	T				S													G	G	G							S															T	T						.			S	S		G	G	G		.	.	.	.	.	.
Template Predicted Secondary structure																																																																.										.	.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.		.	.	.	.	.	.	.	.	490							.	.
		429	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	A	R	L	A	K	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	L	T	A	L	G	N	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.