 |
Job Description | P14900 | Confidence | 97.32% | Date | Thu Jan 5 11:34:07 GMT 2012 |
Rank | 114 | Aligned Residues | 89 |
% Identity | 19% | Template | c2axqA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:saccharopine dehydrogenase; |
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
|
Resolution | 1.70 Å |
|
 |
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | N | V | V | I | I | G | L | G | L | T | G | L | S | C | V | D | F | F | L | A | R | . |
G | V | T | P | R | V | M | D | T | R | M | T | P | P | G | L | D | K | L | P | E | A | V | E | R | H | T | G | S | L | N | D | . |
. |
. |
. |
. |
E | W | L | M | A | A | D | L | I | V | A | S | P | G | I | A | L | A | H |
Query Conservation |   |
|
|   |
|   |
|   |
|   |
|   |
|
|   |
|   |
|   |   |
|   |   |   | . |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
G | K | N | V | L | L | L | G | S | G | F | V | A | Q | P | V | I | D | T | L | A | A | N | D | D | I | N | V | T | V | A | C | R | T | L | A | N | A | Q | A | L | A | K | P | S | G | S | K | A | I | S | L | D | V | T | D | D | S | A | L | D | K | V | L | A | D | N | D | V | V | I | S | L | I | P | Y | T | F | H | P |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
| S | T | T |  |  |  |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | G | G | G | T |
|  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |  | T | S | S |  |  |  |  |
| S |
| G | G | G |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | S | L | S | A | A | A | D | A | G | I | E | I | V | G |
Query Conservation |   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |
|   |
|   |
|
|
Template Sequence |   |
N | V | V | K | S | A | I | R | T | K | T | D | V | V | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|