Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 8 Aligned Residues 327 % Identity 22% Template c2am1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 Resolution 2.50 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.
Predicted Secondary structure																																												.	.	.	.									.																				.	.	.	.
Query SS confidence																																												.	.	.	.									.																				.	.	.	.
Query Sequence		L	F	C	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	.	.	.	.	I	G	L	P	A	L	M	L	.	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F	Q	L	E	T	.	.	.	.	T	S
Query Conservation																																												.	.	.	.									.																				.	.	.	.
Alig confidence																																												.	.	.	.									.																				.	.	.	.
Template Conservation
Template Sequence		Y	Y	L	E	K	T	T	V	D	V	F	A	V	T	G	S	N	G	K	T	T	T	K	D	X	L	A	H	L	L	S	T	R	Y	K	T	Y	K	T	Q	G	N	Y	N	N	E	I	G	L	P	Y	T	V	L	H	X	P	E	G	T	E	K	L	V	L	E	X	G	Q	D	H	L	G	D	I	H	L	L	S	E
Template Known Secondary structure																			S	S	S											T	T	T	S							T	T			S	T	T								T			T	T											S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	.	.	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	A	D	E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N	H	Q	Q	G	E
Query Conservation																																							.	.
Alig confidence																							.																.	.
Template Conservation																							.
Template Sequence		L	A	R	P	K	T	A	I	V	T	L	V	G	E	A	H	L	A	F	F	K	.	D	R	S	E	I	A	K	G	K	X	Q	I	A	D	G	X	A	S	G	S	L	L	L	A	P	A	D	P	I	V	E	D	Y	L	P	I	D	K	K	V	V	R	F	G	Q	G	A	E	L	E	I	T	D	L	V	E	R	K
Template Known Secondary structure						S										S	S		T	T			.										G	G	G	G	T	T			T	T							S		G	G	G	G	G	G			S	S	S						S	T	T	S	S	B									S
Template Predicted Secondary structure																							.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	L	T	F	K	A	N	F	L	E	Q	A	L	D	L	P	V	T	G	K	Y	N	A	T	N	A	X	I	A	S	Y	V	A	L	Q	E	G	V	S	E	E	Q	I	R	L	A	F	Q	H	L	E	L	T	R	N	R	T	E	W	K	K	A	A	N	G	A	D	I	L	S	D	V	Y	N	A	N	P	T	A
Template Known Secondary structure		S							T	T		S	S					S	S																			T	T										G	G	G								S						T	T	T								S			S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		327	.	.	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.												.	.	.
Predicted Secondary structure											.	.	.	.	.											.	.	.	.	.																	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.											.	.	.	.	.																	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	A	A	L	N	G	L	H	.	.	.	.	.	V	D	G	T	L	H	L	L	L	G	.	.	.	.	.	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	.	G	D	N	V	R	L	Y	C	F	G	R	D	G	A	Q	L	A	A	L	R	.	.	.	.	.	.	.	.	.	.	.	P	E	V
Query Conservation											.	.	.	.	.											.	.	.	.	.																	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.											.	.	.	.	.																	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	K	L	I	L	E	T	F	S	A	I	P	A	N	E	G	G	K	K	I	A	V	L	A	D	X	K	E	L	G	D	Q	S	V	Q	L	H	N	Q	X	I	L	S	L	S	P	D	V	L	D	I	V	I	F	Y	G	E	D	I	A	Q	L	A	Q	L	A	S	Q	X	F	P	I	G	H	V	Y	Y	F	K	K
Template Known Secondary structure										T	T	S				S	S															T	T								G	G	G	G			T	T	T		S							S	T	T											S		T	T							B
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L
Query Conservation
Alig confidence																													.	.	.			.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.			.	.	.	.	.	.	.	.	.
Template Sequence		T	E	D	Q	D	Q	F	E	D	L	V	K	Q	V	K	E	S	L	G	A	H	D	Q	I	L	L	K	.	.	.	G	S	.	.	.	.	.	.	.	.	.	N	S	X	N	L	A	K	L	V	E	S	L
Template Known Secondary structure		S	S	S		B	T														T	T							.	.	.	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.			.	.	.	.	.	.	.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440										.	.	.	.	.	.	.	.	.	450	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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