Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 5 Aligned Residues 407 % Identity 22% Template c1j6uA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		G	K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	.	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S	A
Query Conservation																		.
Alig confidence																		.																																				.
Template Conservation																																																						.
Template Sequence		H	X	K	I	H	F	V	G	I	G	G	I	G	X	S	A	V	A	L	H	E	F	S	N	G	N	D	V	Y	G	S	N	I	E	E	T	E	R	T	A	Y	L	R	K	L	G	I	P	I	F	V	P	.	H	S	A	D	N	W	Y	D	P	D	L	V	I	K	T	P	A	V	R	D	D	N	P	E	I	V	R
Template Known Secondary structure									T	T	T	S													T	T								S	S											T	T					S	S	.			T	T	S					S						T	T			T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																																													.	.
Query SS confidence																					.	.	.																																													.	.
Query Sequence		A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	.	.	.	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	I	G	L	P	A	L	M	L	.	.	L	D	D	E	C	E	L	Y	V	L	E	L
Query Conservation																					.	.	.																																													.	.
Alig confidence																					.	.	.																																													.	.
Template Conservation
Template Sequence		A	R	X	E	R	V	P	I	E	N	R	L	H	Y	F	R	D	T	L	K	R	E	K	K	E	E	F	A	V	T	G	T	D	G	K	T	T	T	T	A	X	V	A	H	V	L	K	H	L	R	K	S	P	T	V	F	L	G	G	I	X	D	S	L	E	H	G	N	Y	E	K	G	N	G	P	V	V	Y	E	L
Template Known Secondary structure					T	T																											S	S	S															T	T								S	S			T	T	S	T	T	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	F	Q	L	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	A	D	E	R	C	V	S	F	G	V	N	M	G	D	Y	H
Query Conservation
Alig confidence						.																																																												.	.	.	.	.
Template Conservation						.																																																												.	.	.	.	.
Template Sequence		D	E	S	E	.	E	F	F	S	E	F	S	P	N	Y	L	I	I	T	N	A	R	G	D	H	L	E	N	Y	G	N	S	L	T	R	Y	R	S	A	F	E	K	I	S	R	N	T	D	L	V	V	T	F	A	E	D	E	L	T	S	H	L	G	D	.	.	.	.	.	V	T	F	G	V	K	K	G	T	Y	T
Template Known Secondary structure			T	T	S	.	G	G	G	G	G				S												G	G	G	G	T	T															T		S						T	T		T	T	T	G	G	G		S	.	.	.	.	.					S	S	S	S	S
Template Predicted Secondary structure						.																																																												.	.	.	.	.
Template SS confidence
		159	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.
		240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.
Predicted Secondary structure						.	.	.	.																																																																	.	.
Query SS confidence						.	.	.	.																																																																	.	.
Query Sequence		L	N	H	Q	.	.	.	.	Q	G	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	.	.	L	E	H	N	G	V
Query Conservation						.	.	.	.																																																																	.	.
Alig confidence						.	.	.	.																																																																	.	.
Template Conservation
Template Sequence		L	E	X	R	S	A	S	R	A	E	Q	K	A	X	V	E	K	N	G	K	R	Y	L	E	L	K	L	K	V	P	G	F	H	N	V	L	N	A	L	A	V	I	A	L	F	D	S	L	G	Y	D	L	A	P	V	L	E	A	L	E	E	F	R	G	V	H	R	R	F	S	I	A	F	H	D	P	E	T	N	I
Template Known Secondary structure									S	S									T	T									S	S		S																	T	T																	T	T	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370						.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																									.																																			.	.	.	.	.
Query SS confidence																									.																																			.	.	.	.	.
Query Sequence		R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	V	.	D	G	T	L	H	L	L	L	G	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	.	.	.	.	.	G	R	D	G	A	Q	L	A	A	L	R	P	E	V	A	E	Q
Query Conservation																									.																																			.	.	.	.	.
Alig confidence							.																		.																							.	.	.	.									.	.	.	.	.
Template Conservation							.																																									.	.	.	.
Template Sequence		Y	V	I	D	D	.	Y	A	H	T	P	D	E	I	R	N	L	L	Q	T	A	K	E	V	F	E	N	E	K	I	V	V	I	F	Q	P	H	R	G	N	F	A	K	A	L	Q	.	.	.	.	L	A	D	E	V	V	V	T	E	V	Y	D	S	G	K	X	I	W	D	S	L	K	S	L	G	K	E	A	Y	F
Template Known Secondary structure							.				S																S	S	S									B									T	.	.	.	.	T	S	S								B													T	T
Template Predicted Secondary structure							.																																									.	.	.	.
Template SS confidence
		313	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		V	E	K	L	P	E	L	E	K	V	I	.	.	S	V	S	E	N	T	V	F	L	F	V	G	A	G	D	I	I	Y	S	S	R	R	F	V	E	R
Template Known Secondary structure				S	G	G	G						.	.				S	S								S	S	T
Template Predicted Secondary structure													.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.