Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 6 Aligned Residues 393 % Identity 19% Template c1gqqA_ PDB info PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae Resolution 3.1 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	.	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S	A	A
Query Conservation																	.
Alig confidence																	.																																				.
Template Conservation																																																					.
Template Sequence		Q	Q	I	H	F	I	G	I	G	G	A	G	M	S	G	I	A	E	I	L	L	N	E	G	Y	Q	I	S	G	S	D	I	A	D	G	V	V	T	Q	R	L	A	Q	A	G	A	K	I	Y	I	G	.	H	A	E	E	H	I	E	G	A	S	V	V	V	V	S	S	A	I	K	D	D	N	P	E	L	V	T	S
Template Known Secondary structure								S	T	T	S	T	T												T								S			S										T						S	.			G	G	G	G	T	T		S						S	S	S		T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	.	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	I	G	L	P	A	L	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F	Q	L
Query Conservation																			.
Alig confidence																			.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	K	R	I	P	V	I	Q	R	A	Q	M	L	A	E	I	M	R	F	R	H	G	I	A	V	A	G	T	H	G	K	T	T	T	T	A	M	I	S	M	I	Y	T	Q	A	K	L	D	P	T	F	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	L	I	A	E	A	D	E	F	L	H
Template Known Secondary structure				T																	T	S							S	S	S	S															T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.												S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.															.	.	.	.	.	.	.	.	160	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	.	A	D	E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N	H	Q
Query Conservation																																																													.
Alig confidence		.	.	.	.	.																			.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	Q	P	M	V	S	V	V	T	N	M	E	F	E	K	M	K	A	.	.	.	.	.	.	.	T	Y	V	K	F	L	H	N	L	P	F	Y	G	L	A	V	M	C	A	D	D	P	V	L	M	E	L	V	P	K	V	G	R	Q	V	I	T	Y	G	F	S	E	Q	A	D	Y	R	I	E	D
Template Known Secondary structure		.	.	.	.	.				S															.	.	.	.	.	.	.								T	S		T	T							T	T													S							S	S	T	T		S
Template Predicted Secondary structure		.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
							184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
							244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310				.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																																				.	.	.
Query SS confidence		.	.	.	.	.																																																																				.	.	.
Query Sequence		.	.	.	.	.	Q	G	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	.	.	.	N	G	V	R	W
Query Conservation		.	.	.	.	.																																																																				.	.	.
Alig confidence		.	.	.	.	.																																																																				.	.	.
Template Conservation
Template Sequence		Y	E	Q	T	G	F	Q	G	H	Y	T	V	I	C	P	N	N	E	R	I	N	V	L	L	N	V	P	G	K	H	N	A	L	N	A	T	A	A	L	A	V	A	K	E	E	G	I	A	N	E	A	I	L	E	A	L	A	D	F	Q	G	A	G	R	R	F	D	Q	L	G	E	F	I	R	P	N	G	K	V	R
Template Known Secondary structure						T	T									T	T	S								S	S		S																T	T													T				S	S	S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.												370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	.	.	.	V	D	G	T	L	H	L	L	L	G	.	.	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	.	.	.	.	.	.	.	.	.	.	.	F	G	R	D	G	A	Q	L	A	A
Query Conservation																						.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	D	D	Y	G	H	H	P	T	E	V	G	V	T	I	K	A	A	R	E	G	W	G	D	K	R	I	V	M	I	F	Q	P	H	R	Y	S	R	T	R	D	L	F	D	D	F	V	Q	V	L	S	Q	V	D	A	L	I	M	L	D	V	Y	A	A	G	E	A	P	I	V	G	A	D	S	K	S	L	C	R
Template Known Secondary structure									S															S	S	S										B																	T	T	S	S								B		T	T					T	T		S
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		L	R	P	.	.	.	.	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		S	I	R	N	L	G	K	V	D	P	I	L	V	S	D	T	S	Q	L	G	D	V	L	D	Q	I	I	Q	D	G	D	L	I	L	A	Q	G	A	G	S	V	S	K	I	S	R	G	L	A	E	S
Template Known Secondary structure							T	S									G	G	G											T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.